Seed protein information help

APIS family ID APIS092
Inhibited defense system RecBCD
CLAN ID CLAN036
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
NP_040618.1 gene_page: Gam 138 16346.28 5.7699 -3.5
Phage property
Phage Assembly id
Lambda of E. coli GCF_000840245.1
PMID/References PMID:24086157
PDB structures 2UV1;
Pfam domains PF06064.14
Phrog phrog_259,phrog_26899
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli
Gene Location Start: 32816;  End: 33232;  Strand: -
Description The protein Gam inhibits the host RecBCD exonuclease activity thus allowing efficient rolling-circle replication.

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM
NC_001416.1 30839 31024 - NP_040613.1 61 6738.56 5.0 8.7760 hypothetical protein
NC_001416.1 31005 31196 - NP_040614.1 63 7023.04 -2.5 4.9938 DUF1382 family protein phrog_292 PF07131.14
NC_001416.1 31169 31351 - NP_040615.1 60 6754.93 7.5 11.1907 DUF1317 domain-containing protein phrog_1998 PF07026.14
NC_001416.1 31348 32028 - NP_040616.1 226 25908.58 -3.0 5.4127 exonuclease phrog_434 ; phrog_149 ; phrog_38119 ; phrog_19459 PF09588.13
NC_001416.1 32025 32810 - NP_040617.1 261 29688.64 -6.5 4.8663 RecT-like ssDNA annealing protein phrog_12233 ; phrog_10056 ; phrog_17377 ; phrog_2449 ; phrog_252 ; phrog_8375 ; phrog_2760 PF03837.17 ;PF03837.17
NC_001416.1 32816 33232 - NP_040618.1 138 16346.28 -3.5 5.7699 gam-like host nuclease inhibitor phrog_259 ; phrog_26899 PF06064.14
NC_001416.1 33187 33330 - NP_040619.1 47 5518.58 3.5 10.2786 Kil protein for bacterial septation inhibition phrog_2461 ; phrog_2055 ; phrog_3924 ; phrog_20024 PF06301.14
NC_001416.1 33299 33463 - NP_040620.1 54 6046.92 2.0 9.0019 CIII anti-termination phrog_2461 ; phrog_35423 ; phrog_550 PF02061.19
NC_001416.1 33536 33904 - NP_040621.1 122 13780.39 -12.0 4.0718 hypothetical protein phrog_646 PF10800.11
NC_001416.1 34087 34287 - NP_040622.1 66 7603.86 3.0 8.5100 restriction alleviation ral phrog_1055 ; phrog_17610 PF11058.11
NC_001416.1 34271 34357 - NP_040623.1 28 3698.81 -11.5 3.2418 hypothetical protein

Seed genomic context- JBrowse     

PDB structure: 2UV1 ; Download help

Full Sequence      Download help

Structural homologs

Structure homologs against by afdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
AF-Q32GM6-F1-model_v4 1 78 20 97 0.9773 0.8705

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS092 NP_040618.1 14 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN036

APIS092 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_2513237251_000004|2513237251|2514249572 97.101 1.22e-96 282 100% Escherichia coli IMGVR PF06064 phrog_259 phrog_26899
IMGVR_UViG_2706796269_000001|2706796269|2708712766 97.101 2.74e-96 281 100% Salmonella IMGVR PF06064 phrog_259 phrog_26899
IMGVR_UViG_2713896771_000008|2713896771|2714177310 82.443 5.35e-71 219 93% Escherichia coli IMGVR PF06064 phrog_294 phrog_259 phrog_26899
IMGVR_UViG_2974709687_000001|2974709687|2974709722 97.101 5.61e-95 278 100% Proteobacteria IMGVR PF06064 phrog_259 phrog_26899
IMGVR_UViG_2974711179_000001|2974711179|2974711192 96.377 3.81e-96 281 100% Salmonella IMGVR PF06064 phrog_259 phrog_26899
IMGVR_UViG_3300002231_001651|3300002231|KVRMV2_1001172879 97.656 4.73e-89 264 93% Proteobacteria IMGVR PF06301 PF06064 phrog_3924 phrog_259 phrog_26899 phrog_2461 phrog_20024
IMGVR_UViG_3300009612_000002|3300009612|Ga0105217_10014234 100.000 6.07e-99 288 100% Proteobacteria IMGVR PF06064 phrog_259 phrog_26899
IMGVR_UViG_3300029450_000004|3300029450|Ga0244073_10026657 95.652 2.29e-94 276 100% Enterobacteriaceae IMGVR PF06064 phrog_259 phrog_26899
IMGVR_UViG_3300039333_000048|3300039333|Ga0169237_03033_2010_2426 98.551 3.71e-98 286 100% Gammaproteobacteria IMGVR PF06064 phrog_259 phrog_26899
IMGVR_UViG_3300045988_066558|3300045988|Ga0495776_161089_24453_24869 97.101 1.75e-96 282 100% Enterobacteriaceae IMGVR PF06064 phrog_259 phrog_26899
IMGVR_UViG_3300045988_117741|3300045988|Ga0495776_100461_28810_29226 97.101 7.53e-96 280 100% Gammaproteobacteria IMGVR PF06064 phrog_259 phrog_26899
IMGVR_UViG_3300045988_132460|3300045988|Ga0495776_144655_27985_28401 97.826 1.34e-97 285 100% Gammaproteobacteria IMGVR PF06064 phrog_259 phrog_26899
IMGVR_UViG_638275567_000001|638275567|638277377 96.377 6.89e-96 280 100% Enterobacteriaceae IMGVR PF06064 phrog_259 phrog_26899
NP_040618.1 100.000 4.78e-106 288 100% NCBI PF06064 phrog_259 phrog_26899