Seed protein information help

APIS family ID APIS086
Inhibited defense system
CLAN ID CLAN011
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
ON229909_00228
gene_page: 73 8775.46 10.9149 9.5
Phage property
Phage Assembly id
Escherichia phage vB_EcoM_CE1 ON229909
PMID/References
PDB structures ;
Pfam domains
Phrog phrog_8921,phrog_2375,phrog_3272,phrog_12748
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending toxin-antitoxin (TA) because it belongs to the same clan as family APIS012 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.58 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS086 ON229909_00228 14 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       download full data without filtering help

Clan ID: CLAN011

Hit APIS family E-Value Query Start Query End Hit Start Hit End Immune system Seed protein
APIS012 1.81E-49 1 73 14 86 toxin-antitoxin (TA) NP_049652.1

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_2974743505_000001|2974743505|2974743655 100.000 3.09e-46 150 84% IMGVR phrog_8921 phrog_2375 phrog_3272 phrog_12748
MGV-GENOME-0377451_82 100.000 1.68e-46 150 90% MGV phrog_8921 phrog_2375 phrog_3272 phrog_12748
MGV-GENOME-0377517_58 57.143 2.53e-20 84.7 99% MGV phrog_8921 phrog_2375 phrog_12748
MK327943_00035 55.714 1.59e-19 82.4 100% Escherichia phage vB_EcoM_G53 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
MK373782_00037 57.143 6.97e-20 83.6 100% Escherichia phage vB_EcoM_KAW3E185 Escherichia INPHARED phrog_8921 phrog_2375 phrog_12748
MK886800_00269 98.630 9.24e-46 149 100% Escherichia phage EcNP1 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
MW883059_00026 98.630 7.20e-45 146 100% Escherichia phage vB_EcoM_SYGD1 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
MZ189262_00034 83.117 2.41e-37 128 92% Escherichia phage W143 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
MZ502380_00035 97.260 1.34e-45 148 100% Escherichia phage vB_EcoM_Nami Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
ON229909_00228 100.000 2.73e-46 150 100% Escherichia phage vB_EcoM_CE1 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
ON506924_00037 98.630 1.61e-45 148 100% Escherichia phage vB_EcoM_SCS4 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
ON720975_00159 98.630 4.33e-46 149 100% Salmonella phage GRNsp7 Salmonella INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
OP172786_00049 95.890 3.62e-44 145 100% Escherichia phage ECO07P3 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
OQ703618_00189 57.143 2.54e-20 84.7 96% Escherichia phage GADS24 Escherichia INPHARED phrog_8921 phrog_2375 phrog_12748
APIS Contig Range
APIS086 -

Gene cluster comparison plot by clinker      Download html