Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS085 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN009 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF08684.13 | |||||||||||||
| Phrog | phrog_2568,phrog_2828 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM);bacteriophage exclusion (BREX) because it belongs to the same clan as family APIS010 which has seed protein. | |||||||||||||
Predicted 3D structure by alphafold2 with pTM = 0.51 Download help
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Download
help
Structural homologs
No homologs found in AlphaFold database
No homologs found in esmfold database
Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS085 | OL964750_00001 | 5 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Homology to other families download full data without filtering help
Clan ID: CLAN009
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS010 | 1.02E-74 | 1 | 114 | 1 | 114 | restriction-modification (RM);bacteriophage exclusion (BREX) | NP_041954.1 |
| APIS077 | 5.88E-54 | 1 | 121 | 1 | 121 | - | KU946962_00005 |
| APIS087 | 8.71E-26 | 1 | 111 | 1 | 111 | - | ON528733_00011 |
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| JQ965700_00044 | 93.506 | 3.06e-152 | 430 | 100% | Yersinia phage YpP-Y | Yersinia | INPHARED | PF08684 | phrog_2568 phrog_2828 |
| MZ375236_00001 | 99.567 | 8.29e-165 | 462 | 100% | Escherichia phage T7 | Escherichia | INPHARED | PF08684 | phrog_2568 phrog_2828 |
| MZ375238_00001 | 99.134 | 8.39e-164 | 459 | 100% | Escherichia phage T7 | Escherichia | INPHARED | PF08684 | phrog_2568 phrog_2828 |
| OL964749_00001 | 99.134 | 1.29e-163 | 459 | 100% | Escherichia phage T7 | Escherichia | INPHARED | PF08684 | phrog_2568 phrog_2828 |
| OL964750_00001 | 100.000 | 3.71e-166 | 466 | 100% | Escherichia phage T7 | Escherichia | INPHARED | PF08684 | phrog_2568 phrog_2828 |
| APIS | Contig | Range |
|---|---|---|
| APIS085 | - |