Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS032 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | superinfection exclusion | |||||||||||||
| CLAN ID | CLAN029 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:15518820 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_1119 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | Superinfection exclusion, inactivates FhuA receptor. | |||||||||||||
Predicted 3D structure by alphafold2 with pTM = 0.57 Download help
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Download
help
Structural homologs
No homologs found in AlphaFold database
Structure homologs against by esmdb (html) ; download full result table
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001057303570.pdb | 24 | 77 | 11 | 64 | 0.8703 | 0.6629 |
Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS032 | YP_007947949.1 | 178 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| APIS | Contig | Range |
|---|---|---|
| APIS032 | NC_021190.1 | - |