Information for CAZyme ID: WIM20466.1
Basic Information
| GenBank ID | WIM20466.1 |
| Family | CBM12, GH18 |
| Sequence Length | 529 |
| UniProt ID | WIM20466.1(MOD) |
| Average pLDDT? | 79.19 |
| CAZy50 ID | 63140 |
| CAZy50 Rep | Yes, WIM20466.1 |
| Structure Cluster | SC_CBM12_clus10, SC_GH18_clus430 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 3049070 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Microbacterium |
| Species | Microbacterium sp. zg-B185 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MSTTTEESSR PGRLHRVVTL IAVLGLVASG AIAGVSTSVS TASAAETTGC APFHQPYSGD | 60 |
| PAYVKGDKVT FNGKVYVSTF APNWWSPSAA PQYWSETTCD TVAGTPAPTP TPTATPTPTP | 120 |
| TPTPTVTPTA CRPFVQPYSG DPAYVKGDKV TFNGKPYVST FAPNWWSPSA APQYWSETTC | 180 |
| GGTTTPTPTP TPTPTPTPTP GGGTPPPTGT PSGMVFSPYK DIAQAMFWST GYTMGTTAVN | 240 |
| GSPTPLVGAG TTLQSTLPQL NTITLAFATG ECGAENWAGV SGPDFAAANV AGLDAADYDY | 300 |
| ILGTGGAAGS FTCASAAGMR TFIDRYASDN LIGVDFDIER GQSAADIRNQ VAAAAAVQDL | 360 |
| YPNLRFSFTV ATLGASDGSF GGVNDTGDTV IKAVLASPLR NYTINLMVMD YGPASSSVCV | 420 |
| MSGAICDMGK SAIQAAKNLR HSYPAVPLDK VELTPMIALN DIPDETFTLQ DIDEMTAYAV | 480 |
| ANDLAGLHYW SLDRDVPCGS TALSNTCNST PSVPALAYTN RFLTALGRL | 529 |
Predicted 3D structure by AlphaFold2 with pLDDT = 79.19 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MSTTTEESSR PGRLHRVVTL IAVLGLVASG AIAGVSTSVS TASAAETTGC APFHQPYSGD | 60 |
| PAYVKGDKVT FNGKVYVSTF APNWWSPSAA PQYWSETTCD TVAGTPAPTP TPTATPTPTP | 120 |
| TPTPTVTPTA CRPFVQPYSG DPAYVKGDKV TFNGKPYVST FAPNWWSPSA APQYWSETTC | 180 |
| GGTTTPTPTP TPTPTPTPTP GGGTPPPTGT PSGMVFSPYK DIAQAMFWST GYTMGTTAVN | 240 |
| GSPTPLVGAG TTLQSTLPQL NTITLAFATG ECGAENWAGV SGPDFAAANV AGLDAADYDY | 300 |
| ILGTGGAAGS FTCASAAGMR TFIDRYASDN LIGVDFDIER GQSAADIRNQ VAAAAAVQDL | 360 |
| YPNLRFSFTV ATLGASDGSF GGVNDTGDTV IKAVLASPLR NYTINLMVMD YGPASSSVCV | 420 |
| MSGAICDMGK SAIQAAKNLR HSYPAVPLDK VELTPMIALN DIPDETFTLQ DIDEMTAYAV | 480 |
| ANDLAGLHYW SLDRDVPCGS TALSNTCNST PSVPALAYTN RFLTALGRL | 529 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.