CAZyme3D

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Entry ID

Information for CAZyme ID: WHY73369.1

Basic Information

GenBank IDWHY73369.1
FamilyGH2
Sequence Length752
UniProt IDA0A4Q2HSZ7(99.1,100)Download
Average pLDDT?87.63
CAZy50 ID32571
CAZy50 RepYes, WHY73369.1
Structure ClusterSC_GH2_clus95
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1017270
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusFictibacillus
SpeciesFictibacillus enclensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSRECREKLS  LNGIWKCVQD  EDDQLEGNIR  NKPVYHAEEL  TWTDILVPAH  WQKAGYEDFQ60
GVMWYKATFR  APPKKSDKMF  YICFDAVDYY  SEVWLNGVYL  GTHEGDFDAF  EFNVSDFLHN120
GEENILVVKV  TSELDTRPER  KKIAKGGLYH  WDCLPVNQEG  LTDCPEVPSS  VNAHYPNPLI180
NPGGIWKDVY  LEERGKVHIE  HIQITPYLKD  DYKKATIYLD  VELNNNNSKE  ARIDVEVSFL240
PHNFRGKIYR  WKRQSYFQRP  GTSSYSMTDQ  LSQPKLWWTW  ELGFPHLYKA  VIEVWANGVL300
VDKKIQIFGI  KEIKMDENWI  FYLNGTRVFI  RGNNYLSDQF  LSLMTKESYQ  LDVQMMLDAN360
MNTTRLFAHA  EQEEFYQLCN  EKGIMVFQDL  PFQWGYESTG  LFIKRAEDVA  RRFIRMLYNH420
PSIILWSCHS  ESRYHDYNKL  DNMLLRVVKE  LDSLRPVIKN  SVLVSDEELP  HYFETLDDFT480
TYIGTHLSVH  WVGWYWGKIE  DAEFYNPMFV  TEYGTQSIPN  EDSLKKFMNQ  ESLWPVNWEI540
YRTWGFQTNI  YQTMMGSVMT  QSLQDLIDIT  QDYQVQFYKE  HTEALRRKKY  NQVGGLLQFH600
FVNTGPSIDW  SIIDYYRQPK  KAYFAMAKAF  EPLHLSFNGD  ITEGELGRTA  TVIPWIINDY660
NVAFKNYEVT  YKVFLEDGTL  VDQQKLSVPL  IEKDSVQSFE  SLTLPVAKGE  TITVTGQLKD720
MNGTLIMEND  KVIRSLPSAD  ELQDPFKSPI  RL752

Predicted 3D structure by AlphaFold2 with pLDDT = 87.63 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSRECREKLS  LNGIWKCVQD  EDDQLEGNIR  NKPVYHAEEL  TWTDILVPAH  WQKAGYEDFQ60
GVMWYKATFR  APPKKSDKMF  YICFDAVDYY  SEVWLNGVYL  GTHEGDFDAF  EFNVSDFLHN120
GEENILVVKV  TSELDTRPER  KKIAKGGLYH  WDCLPVNQEG  LTDCPEVPSS  VNAHYPNPLI180
NPGGIWKDVY  LEERGKVHIE  HIQITPYLKD  DYKKATIYLD  VELNNNNSKE  ARIDVEVSFL240
PHNFRGKIYR  WKRQSYFQRP  GTSSYSMTDQ  LSQPKLWWTW  ELGFPHLYKA  VIEVWANGVL300
VDKKIQIFGI  KEIKMDENWI  FYLNGTRVFI  RGNNYLSDQF  LSLMTKESYQ  LDVQMMLDAN360
MNTTRLFAHA  EQEEFYQLCN  EKGIMVFQDL  PFQWGYESTG  LFIKRAEDVA  RRFIRMLYNH420
PSIILWSCHS  ESRYHDYNKL  DNMLLRVVKE  LDSLRPVIKN  SVLVSDEELP  HYFETLDDFT480
TYIGTHLSVH  WVGWYWGKIE  DAEFYNPMFV  TEYGTQSIPN  EDSLKKFMNQ  ESLWPVNWEI540
YRTWGFQTNI  YQTMMGSVMT  QSLQDLIDIT  QDYQVQFYKE  HTEALRRKKY  NQVGGLLQFH600
FVNTGPSIDW  SIIDYYRQPK  KAYFAMAKAF  EPLHLSFNGD  ITEGELGRTA  TVIPWIINDY660
NVAFKNYEVT  YKVFLEDGTL  VDQQKLSVPL  IEKDSVQSFE  SLTLPVAKGE  TITVTGQLKD720
MNGTLIMEND  KVIRSLPSAD  ELQDPFKSPI  RL752

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(5-708)

MSRECREKLS  LNGIWKCVQD  EDDQLEGNIR  NKPVYHAEEL  TWTDILVPAH  WQKAGYEDFQ60
GVMWYKATFR  APPKKSDKMF  YICFDAVDYY  SEVWLNGVYL  GTHEGDFDAF  EFNVSDFLHN120
GEENILVVKV  TSELDTRPER  KKIAKGGLYH  WDCLPVNQEG  LTDCPEVPSS  VNAHYPNPLI180
NPGGIWKDVY  LEERGKVHIE  HIQITPYLKD  DYKKATIYLD  VELNNNNSKE  ARIDVEVSFL240
PHNFRGKIYR  WKRQSYFQRP  GTSSYSMTDQ  LSQPKLWWTW  ELGFPHLYKA  VIEVWANGVL300
VDKKIQIFGI  KEIKMDENWI  FYLNGTRVFI  RGNNYLSDQF  LSLMTKESYQ  LDVQMMLDAN360
MNTTRLFAHA  EQEEFYQLCN  EKGIMVFQDL  PFQWGYESTG  LFIKRAEDVA  RRFIRMLYNH420
PSIILWSCHS  ESRYHDYNKL  DNMLLRVVKE  LDSLRPVIKN  SVLVSDEDLP  HYFETLDDFT480
TYIGTHLSVH  WVGWYWGKIE  DAEFYNPMFV  TEYGTQSIPN  EDSLKKFMNQ  ESLWPVNWEI540
YRTWGFQTNI  YQTMMGSVMT  QSLQDLINIT  QDYQVQFYKE  HTEALRRKKY  NQVGGLLQFH600
FVNTGPSIDW  SIIDYYRQPK  KAYFAMAKAF  EPLHLSFNGD  ITEGELGRTA  TVIPWIINDY660
NVAFENYEVT  YKVFLEDGTL  VDQQKFSVPL  IEKDSVQSFE  SLTLPVAKGE  TVTVTGQLKD720
MNGTLIMEND  KVIRSLPSED  EVQDPFKSPI  RL752

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help