CAZyme3D

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Entry ID

Information for CAZyme ID: WHY22263.1

Basic Information

GenBank IDWHY22263.1
FamilyCE12, PL11_1
Sequence Length2123
UniProt IDA0A5B0WS76(95.4,96.9)Download
Average pLDDT?87.16
CAZy50 ID1223
CAZy50 RepYes, WHY22263.1
Structure ClusterSC_CE12_clus85, SC_PL11_clus21
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3047872
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. G2S3

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIASGNYSPE  KYLSKEEGIR  ARSELIFEER  ITTKLIVSVY  YNWARCVLSS  FNHKKAGEAR60
KMKRNKMGNK  ILIVLLSWIF  ICSSLFPSTT  FGVQPASADS  GPITLLYDFG  TATSPVMSGY120
TGVHESKLYT  KELGYGLDQA  VASRNRSGGD  ALTNDFVLGL  SYSFLVDLPN  GDYDVTIFSG180
DLLAGTSTTK  TTITLEGITA  GSISSKQAVN  QATYRTTVQD  GQLTVGITGT  GVGGYLNGLM240
IQQIVPGPLK  APEGLAVTNL  SPTAVSLGWS  SVTEAVYYNI  YRTELPSGTI  QPVAQVAVNS300
YVDSDVNEGG  GYIYNVSAVN  GTGEESALSA  SVTVDKIPGV  EVPAAPTGLS  IVSVGISSVQ360
LSWNNVAGAT  RYTILRSDSA  DGTFHEIGQS  ETATFTDVAV  DTSKRQYYGV  KAANAQGESQ420
LSNKVESLVY  TPPVTLPDGN  VYSFDFGPGA  AAEGYLKVDA  GVSYSPAVKY  GFTDISKVTG480
VDRGTSDPLR  SDFVVPKETT  FNVDLPNGDY  TVSLIAGDSA  GDTDIGIKVE  SIQKVQQTSK540
TNGQYLEMNF  DIALVDGQMN  FVFSGTKPNI  NALVITKQPD  RPANELPAVY  IAGDSTVQTY600
DPYWIPQAGW  GQMIAEFFSQ  EVTFKNHAIG  GRSSKSFIVE  GRLDEVLRKI  QPGDYFLIQF660
GHNDATISVP  DRYASPADYK  NYLKTYVEGA  RQRGATPILV  TPMGRRDFNA  ATGKFNVSFP720
EYVQAMKEVA  NELHVDLVDL  SALSVAYYNS  IGFAATRSVF  LHLDAGIYGA  FPNGSADDTH780
FQEYGAIQMA  RLLAKGIEQL  NIPLSSFVQD  IKQPETVPAK  PKGLVAGSIS  NAGAVLKWDK840
VEGADIYKIY  RKLASEAESA  YTLAGTATVP  TLTLSGMAEG  NSYSVRVTAV  NGLGESQPSD900
EVKLTTKSAQ  YRYDFGPVGS  PVAAGYTEVN  RNVLYTSERG  YGLTSSEGMI  DRDRGSATDA960
LRRDFVIYFG  GSYEFKVDLP  NGYYSVKTYT  GDWIGSAKTN  VAIEGKDYGT  VSSGKENIAE1020
KLYNQIAVKD  GQMNLVFSGT  TAHLNGLEIT  PLLLAPTNLK  LGGLDLNSEP  ITANLSWDEM1080
DGALKYRVYR  QATVASSAEL  LGETTGPVYT  DTTADIGMEY  IYTVTSVDST  GLESVGSNAL1140
KVSMIDPSVA  KAAVPSGLAV  QSTNKNDVTF  TWNEVPDARM  FNIYRAKSAD  GEFILIGKSF1200
EASYTDTTIL  STIPYYYKVA  SVNAGGISNL  SATLETSAVT  TLYRKMEALD  RAPVAVKTDA1260
GVYISWRMLG  LDSESIGFNL  YRGEEKLNDS  LITQSTNYLD  TSGTADAKYR  ITSVINGVEK1320
AASEEFSVWQ  KQYLSIPLQK  PADDYTKDGQ  PYTYSAGDAS  VGDVDGDGVY  EIIMLWSPSN1380
SKDNSQAGYT  GLVYMDAYKL  DGTRLWRINL  GPNIRAGAHY  SPFMVYDLDS  DGRAEIMLKT1440
ADGTVDGQGT  VIGDASADYR  NSSGYVLLGN  EYLTVFEGAT  GRAVDTVSYD  PPRGDVGAWG1500
DAYGNRVDRF  LAAVAYLDGE  QPSVIFSRGY  YTRTVLAAYN  YRGGKLEKVW  RFDSNDEGYG1560
EYAGQGNHNL  SVGDVDGDGK  DEITFGAMAI  DDDGLPLYNT  KLGHGDAIHF  GDLDPTRPGL1620
EVFDVHEHTD  SKYGIEMRDA  ATGETLWGVF  TGIDTGRGMS  ADIDPRYTGE  EVWAATITNE1680
VQIPVTGVYS  AQGELITNKL  PSSTNFGIWW  DGDLLRELLD  SNRVDKWDYT  NQTTANLLTA1740
TGASSNNGTK  ANPSLQADLF  GDWREEVIWR  ATDSSELRIY  TTTDMTDYRI  RTLMHDPIYR1800
LGVAWQNVGY  NQPPHPGFFL  GEGMELPAAP  KIQYVGSPVE  TEDTTPPVIT  GLPSIQMSES1860
DILKVQVVAE  DPESGIRSLD  ITFDGKEVVY  GDEIPLKGLA  GSHTFIATAV  NNAGLSTTEQ1920
VIVVVSGPQK  ATGVPGQPVL  SNNNGQDIGL  LDGDYKITMN  MWWGNNGTVY  KLYENGTLID1980
TQTLRDDSPA  AQTAMTSVTG  KENGTYTYKA  ELTNAFGTTA  STSHVVTVKD  AAPGKPVLSN2040
DNWDGDGEYK  VTMNLWWGMN  GKVYRLYENG  VLIDTQTLTA  NTPNAQTAST  SITNRSPGAY2100
EYRVELMNDQ  GVSESTVMKV  TVK2123

Predicted 3D structure by AlphaFold2 with pLDDT = 87.16 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIASGNYSPE  KYLSKEEGIR  ARSELIFEER  ITTKLIVSVY  YNWARCVLSS  FNHKKAGEAR60
KMKRNKMGNK  ILIVLLSWIF  ICSSLFPSTT  FGVQPASADS  GPITLLYDFG  TATSPVMSGY120
TGVHESKLYT  KELGYGLDQA  VASRNRSGGD  ALTNDFVLGL  SYSFLVDLPN  GDYDVTIFSG180
DLLAGTSTTK  TTITLEGITA  GSISSKQAVN  QATYRTTVQD  GQLTVGITGT  GVGGYLNGLM240
IQQIVPGPLK  APEGLAVTNL  SPTAVSLGWS  SVTEAVYYNI  YRTELPSGTI  QPVAQVAVNS300
YVDSDVNEGG  GYIYNVSAVN  GTGEESALSA  SVTVDKIPGV  EVPAAPTGLS  IVSVGISSVQ360
LSWNNVAGAT  RYTILRSDSA  DGTFHEIGQS  ETATFTDVAV  DTSKRQYYGV  KAANAQGESQ420
LSNKVESLVY  TPPVTLPDGN  VYSFDFGPGA  AAEGYLKVDA  GVSYSPAVKY  GFTDISKVTG480
VDRGTSDPLR  SDFVVPKETT  FNVDLPNGDY  TVSLIAGDSA  GDTDIGIKVE  SIQKVQQTSK540
TNGQYLEMNF  DIALVDGQMN  FVFSGTKPNI  NALVITKQPD  RPANELPAVY  IAGDSTVQTY600
DPYWIPQAGW  GQMIAEFFSQ  EVTFKNHAIG  GRSSKSFIVE  GRLDEVLRKI  QPGDYFLIQF660
GHNDATISVP  DRYASPADYK  NYLKTYVEGA  RQRGATPILV  TPMGRRDFNA  ATGKFNVSFP720
EYVQAMKEVA  NELHVDLVDL  SALSVAYYNS  IGFAATRSVF  LHLDAGIYGA  FPNGSADDTH780
FQEYGAIQMA  RLLAKGIEQL  NIPLSSFVQD  IKQPETVPAK  PKGLVAGSIS  NAGAVLKWDK840
VEGADIYKIY  RKLASEAESA  YTLAGTATVP  TLTLSGMAEG  NSYSVRVTAV  NGLGESQPSD900
EVKLTTKSAQ  YRYDFGPVGS  PVAAGYTEVN  RNVLYTSERG  YGLTSSEGMI  DRDRGSATDA960
LRRDFVIYFG  GSYEFKVDLP  NGYYSVKTYT  GDWIGSAKTN  VAIEGKDYGT  VSSGKENIAE1020
KLYNQIAVKD  GQMNLVFSGT  TAHLNGLEIT  PLLLAPTNLK  LGGLDLNSEP  ITANLSWDEM1080
DGALKYRVYR  QATVASSAEL  LGETTGPVYT  DTTADIGMEY  IYTVTSVDST  GLESVGSNAL1140
KVSMIDPSVA  KAAVPSGLAV  QSTNKNDVTF  TWNEVPDARM  FNIYRAKSAD  GEFILIGKSF1200
EASYTDTTIL  STIPYYYKVA  SVNAGGISNL  SATLETSAVT  TLYRKMEALD  RAPVAVKTDA1260
GVYISWRMLG  LDSESIGFNL  YRGEEKLNDS  LITQSTNYLD  TSGTADAKYR  ITSVINGVEK1320
AASEEFSVWQ  KQYLSIPLQK  PADDYTKDGQ  PYTYSAGDAS  VGDVDGDGVY  EIIMLWSPSN1380
SKDNSQAGYT  GLVYMDAYKL  DGTRLWRINL  GPNIRAGAHY  SPFMVYDLDS  DGRAEIMLKT1440
ADGTVDGQGT  VIGDASADYR  NSSGYVLLGN  EYLTVFEGAT  GRAVDTVSYD  PPRGDVGAWG1500
DAYGNRVDRF  LAAVAYLDGE  QPSVIFSRGY  YTRTVLAAYN  YRGGKLEKVW  RFDSNDEGYG1560
EYAGQGNHNL  SVGDVDGDGK  DEITFGAMAI  DDDGLPLYNT  KLGHGDAIHF  GDLDPTRPGL1620
EVFDVHEHTD  SKYGIEMRDA  ATGETLWGVF  TGIDTGRGMS  ADIDPRYTGE  EVWAATITNE1680
VQIPVTGVYS  AQGELITNKL  PSSTNFGIWW  DGDLLRELLD  SNRVDKWDYT  NQTTANLLTA1740
TGASSNNGTK  ANPSLQADLF  GDWREEVIWR  ATDSSELRIY  TTTDMTDYRI  RTLMHDPIYR1800
LGVAWQNVGY  NQPPHPGFFL  GEGMELPAAP  KIQYVGSPVE  TEDTTPPVIT  GLPSIQMSES1860
DILKVQVVAE  DPESGIRSLD  ITFDGKEVVY  GDEIPLKGLA  GSHTFIATAV  NNAGLSTTEQ1920
VIVVVSGPQK  ATGVPGQPVL  SNNNGQDIGL  LDGDYKITMN  MWWGNNGTVY  KLYENGTLID1980
TQTLRDDSPA  AQTAMTSVTG  KENGTYTYKA  ELTNAFGTTA  STSHVVTVKD  AAPGKPVLSN2040
DNWDGDGEYK  VTMNLWWGMN  GKVYRLYENG  VLIDTQTLTA  NTPNAQTAST  SITNRSPGAY2100
EYRVELMNDQ  GVSESTVMKV  TVK2123

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE12(589-797)+CBM37(836-889)+PL11(1244-1842)

MGNKILIVLL  SWVFICSSLF  PSTTFGVQPA  SADSGPITLR  YDFGTATSPV  MSGYTAVHES60
KLYTKELGYG  LDQAVASRNR  SGGDELTNDF  VLGLSYAFLV  DLPNGDYDVT  VFSGDLLAGT120
SNTKTTITLE  GVTAGSISSK  QAVNQATYRT  TVQDGQLTVG  ITGTGVGGYL  NGLMIQQIVP180
GPLQAPEGLA  VTNLSPTAVS  LGWSSVTEAV  YYNIYRTELP  SGTIQSVAQV  TANSYVDSDV240
NEGSGYIYNV  SAVKGSGEES  ALSAPVTVDE  IPGAEVPAAP  TGLSIVSVGA  SSVQLSWNNV300
AGATRYTILG  SDSADGSFQE  IGQSETATFT  DVAVDTSKRQ  YYGVKAANAQ  GESQLSNKVE360
SMVYTPPVTL  PEGNVYSFDF  GPGAAAEGYL  KVDAGVSYSS  AVKYGFTDIS  KVTGVDRGTT420
DPLRSDLVVP  KDTTFNVDLP  NGDYIVSLIA  GDSVGDTDIG  IKVESIQKVQ  QTSKTAGQYL480
EMSFDIALVD  GQMNLVFSGM  KPNINALVIT  KQPDRPANEL  PTVYIAGDST  VQTYDPYWIP540
QAGWGQMIPD  FFSEEVTFKN  HAIGGRSSKS  FIVEGRLDEV  LRKIQPGDYF  LIQFGHNDAT600
ISVPDRYASP  ADYKNYLKTY  VEGARQRGAT  PILVTPMGRR  DYNAATEKFN  VSFPEYVQAM660
KEVANELHVE  LVDLSALSVA  YYNSIGFAAT  RSVFLHLDAG  IYGAFPNGSA  DDTHFQEYGA720
IQMARLLAKG  IEQLNIPLSS  FVQDIKQPET  VPAKPKGLVA  GSISNAGAVL  KWDKVEGADI780
YKIYRKLASE  AETAYALAGT  ATVPTLTLSG  MAEGNSYSVR  VTAVNGLGES  EPSDEVKLTT840
KSAQYRYDFG  PVGSPVAAGY  TEVNRNVLYT  TERGYGLSSS  EGMSDRDRGS  ATDALRRDFV900
IYFGGSYEFK  VDLPNGYYSV  KTYTGDWIGS  TKTNVAIEGK  DYGTVSSGKE  NIAEKLYNQI960
AVKDGQMNLV  FSGTTAHLNG  LEITPLLLAP  TNLKLASLDL  NNEPITANLS  WDGMDGALKY1020
RVYRQATVAN  SAELLGETTE  PLYTDTTADI  GMEYIYTVTS  VDSTGLESVT  SNALKVSMID1080
PAVAKAAVPS  GLSVQSTNKN  DVTFTWNEVS  DARMFNIYRA  KSADGEFILI  GKSFEASYTD1140
TTILSTIPYY  YKVASVNAGG  ISDLSASLET  SAVTTLYRKM  EALDRAPVAV  KTDAGVYISW1200
RMLGLDPESI  GFNLYRGEEK  LNDSLITHST  NYLDTSGTAD  AKYRITSVIN  GVEKAASEEF1260
SVWQKQYLSI  PLQKPADDYT  KDGQPYTYSA  GDASVGDVDG  DGVYEIIMLW  SPSNSKDNSQ1320
AGYTGLVYMD  AYKLDGTRLW  RINLGPNIRA  GAHYSPFMVY  DLDSDGRAEI  MLKTADGTVD1380
GQGTVIGDAS  ADYRNSSGYV  LLGNEYLTVF  EGATGRAVDT  VSYDPPRGDV  GAWGDAYGNR1440
VDRFLAAVAY  LDGEQPSVIF  SRGYYTRTVL  AAYNYRGGKL  EKVWRFDSNE  EGYGDYAGQG1500
NHNLSVGDVD  GDGKDEITFG  AMAIDDDGLP  LYNTKLGHGD  AIHFGDLDPT  RPGLEVFDVH1560
EHTDSKYGIE  MRDAATGETI  WGVFTGIDTG  RGMSADIDPR  YAGEEVWAAT  ITNEVQIPVT1620
GVYSAQGELI  TNKLPSSTNF  GIWWDGDLLR  ELLDSNRVDK  WDYTNQTTAN  LLTATGASSN1680
NGTKANPSLQ  ADLFGDWREE  VIWRATDSSE  LRIYTTTDMT  DYRIRTLMHD  PIYRLGVAWQ1740
NVGYNQPPHP  GFFLGEGMEQ  PAAPKIQYVG  SPGETEDTTP  PAITGLPSTQ  MSESDVLKVQ1800
VVAEDPESGV  RSLAITFDGK  EVVYGDKIPL  TGLTGSHTFI  ATAVNNAGLS  TTEQVIIVVN1860
GPQKATGIPG  QPVLSNNNGQ  DTGLLDGDYQ  ITMNMWWGNN  GTIYKLYENG  TLIDTQTLRD1920
DSPTAQTAVT  SVTGKENGTY  TYTAELTNSF  GTTVSAAHVV  IVKDAAPGKP  VLSNDNWDGD1980
GEYKVTMNQW  WGMNGKVYRL  YENGVLIDTQ  TLTANTPNAQ  TASTSITNRS  PGVYEYRVEL2040
MNDQGVSESA  VMKVSVK2057

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help