Information for CAZyme ID: WHY22128.1
Basic Information
| GenBank ID | WHY22128.1 |
| Family | CBM13, CBM32, GH110, GH2, GH95 |
| Sequence Length | 4313 |
| UniProt ID | WHY22128.1(MOD) |
| Average pLDDT? | 63.05 |
| CAZy50 ID | 118 |
| CAZy50 Rep | Yes, WHY22128.1 |
| Structure Cluster | SC_CBM13_clus30, SC_CBM13_clus31, SC_CBM32_clus40, SC_CBM32_clus47, SC_CBM32_clus63, SC_GH110_clus33, SC_GH2_clus169, SC_GH95_clus60 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 3047872 |
| Kingdom | Bacteria |
| Phylum | Bacillota |
| Class | Bacilli |
| Order | Bacillales |
| Family | Paenibacillaceae |
| Genus | Paenibacillus |
| Species | Paenibacillus sp. G2S3 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
Predicted 3D structure by AlphaFold2 with pLDDT = 63.05 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH95(47-780)+CBM13(826-960)+CBM13(973-1114)+GH110(1276-1806)+CBM32(1863-1987)+GH2(2167-2749)+CBM32(2964-3077)+CBM32(3102-3211)+CBM32(3237-3349)+CBM32(3368-3493)+SLH(4134-4169)+SLH(4190-4229)+SLH(4256-4298)
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.