CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: WHA08904.1

Basic Information

GenBank IDWHA08904.1
FamilyCBM5, GH18
Sequence Length520
UniProt IDWHA08904.1(MOD)Download
Average pLDDT?88.58
CAZy50 ID64895
CAZy50 RepYes, WHA08904.1
Structure ClusterSC_CBM5_clus12, SC_CBM5_clus3, SC_GH18_clus298
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3031993
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyEnterococcaceae
GenusEnterococcus
SpeciesEnterococcus montenegrensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSNDKKNKSR  RLSLFRCLVV  LVIIGGAVTL  FLNGDKLVAT  GTKKKEVKQQ  TTAPWFASYV60
DTTLTPQYAF  EQYADNVVLS  FVVAQKNGQK  PSWGAAYSLD  EASNDLDLDR  RIARLRQKGS120
EIIVSFGGLL  NDELALAYQK  PAELAKAYKS  VIDRYELNTI  DLDLENKGLT  DKEAGKRRGE180
ALAQLQAEQK  KENKKLAIWL  TLPATPKGLT  KDGTDAVATL  LTAGVDLAGV  NIMTMNYGDS240
RDKKLSMAEN  SINALKQTHR  QLKILYQEQD  INLTNETLWT  KLGATPMIGQ  NDVLSEVFTL300
QDARKLNTFA  KKKNLGRVSM  WSANRDRKSR  ESNINTQVVS  NHATGVKQEE  GEFANLLKEG360
LTGSIKADAK  RETVSELSEE  ELQKADDPAT  SPYEIWQEAG  VYLAGTKVVW  KHNVYRAKWW420
TKGEAPDSPV  LQSSEIPWEL  VGPVLPGEKP  LPKVQLPADA  YLQWNSEVVY  HSGDRVMFEG480
VGYEAKWWNQ  GENPEKSGAN  SDEAPWQALT  QAEIKEFLKK  520

Predicted 3D structure by AlphaFold2 with pLDDT = 88.58 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSNDKKNKSR  RLSLFRCLVV  LVIIGGAVTL  FLNGDKLVAT  GTKKKEVKQQ  TTAPWFASYV60
DTTLTPQYAF  EQYADNVVLS  FVVAQKNGQK  PSWGAAYSLD  EASNDLDLDR  RIARLRQKGS120
EIIVSFGGLL  NDELALAYQK  PAELAKAYKS  VIDRYELNTI  DLDLENKGLT  DKEAGKRRGE180
ALAQLQAEQK  KENKKLAIWL  TLPATPKGLT  KDGTDAVATL  LTAGVDLAGV  NIMTMNYGDS240
RDKKLSMAEN  SINALKQTHR  QLKILYQEQD  INLTNETLWT  KLGATPMIGQ  NDVLSEVFTL300
QDARKLNTFA  KKKNLGRVSM  WSANRDRKSR  ESNINTQVVS  NHATGVKQEE  GEFANLLKEG360
LTGSIKADAK  RETVSELSEE  ELQKADDPAT  SPYEIWQEAG  VYLAGTKVVW  KHNVYRAKWW420
TKGEAPDSPV  LQSSEIPWEL  VGPVLPGEKP  LPKVQLPADA  YLQWNSEVVY  HSGDRVMFEG480
VGYEAKWWNQ  GENPEKSGAN  SDEAPWQALT  QAEIKEFLKK  520

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(69-334)+CBM5(394-433)+CBM5(463-506)

MSNDKKNKSR  RLSLFRCLVV  LVIIGGAVTL  FLNGDKLVAT  GTKKKEVKQQ  TTAPWFASYV60
DTTLTPQYAF  EQYADNVVLS  FVVAQKNGQK  PSWGAAYSLD  EASNDLDLDR  RIARLRQKGS120
EIIVSFGGLL  NDELALAYQK  PAELAKAYKS  VIDRYELNTI  DLDLENKGLT  DKEAGKRRGE180
ALAQLQAEQK  KENKKLAIWL  TLPATPKGLT  KDGTDAVATL  LTAGVDLAGV  NIMTMNYGDS240
RDKKLSMAEN  SINALKQTHR  QLKILYQEQD  INLTNETLWT  KLGATPMIGQ  NDVLSEVFTL300
QDARKLNTFA  KKKNLGRVSM  WSANRDRKSR  ESNINTQVVS  NHATGVKQEE  GEFANLLKEG360
LTGSIKADAK  RETVSELSEE  ELQKADDPAT  SPYEIWQEAG  VYLAGTKVVW  KHNVYRAKWW420
TKGEAPDSPV  LQSSEIPWEL  VGPVLPGEKP  LPKVQLPADA  YLQWNSEVVY  HSGDRVMFEG480
VGYEAKWWNQ  GENPEKSGAN  SDEAPWQALT  QAEIKEFLKK  520

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help