CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: WGK83271.1

Basic Information

GenBank IDWGK83271.1
FamilyGH32
Sequence Length496
UniProt IDWGK83271.1(MOD)Download
Average pLDDT?93.79
CAZy50 ID69814
CAZy50 RepYes, WGK83271.1
Structure ClusterSC_GH32_clus93
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID28171
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio aestuarianus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQQLAKDPYR  PTMHFTPPFG  WMNDPNGLVY  INNEYHLFYQ  YFPYANKWGP  MHWGHAVSAD60
LRNWQHLPPA  LVPDEKGMCF  SGSAVIDWKN  SSGLFNDSEQ  PGVIALYTAC  IAPSNGTDGE120
QMQSLAYSRD  GGFSWEKLEQ  NPILANPGLK  DFRDPKVIWH  EESQHWIMVI  TEGQEIGFYR180
SGDLNVWEKI  STFGLEEGAH  DPLPWECPDL  FPIQLEGSDE  TYWVLIVGVQ  GCSFAGGSGT240
QYFIGQFDGE  NFVNHHEPET  VLWLDYGRDY  YAAQTWSDVA  DGSRVAIAWM  SNWQYANEVP300
TRNWRSAMSA  PRSMKLCKTD  AGLRLLSEIP  KEWGLEMERQ  THPASGTSLN  QGHSLKLSNS360
YQAGVVDATL  IFEIGSELKI  APFGNESLVY  IVCRSEAGYH  LTTKRVIADE  GEENYQKTFA420
SDVMLDLPQN  DELNLVALID  RCSSEHLLQQ  GEFCVTDLSF  DSYVSGYELT  CIKGAVKLER480
LNFCAQSVGN  PTTKAA496

Predicted 3D structure by AlphaFold2 with pLDDT = 93.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQQLAKDPYR  PTMHFTPPFG  WMNDPNGLVY  INNEYHLFYQ  YFPYANKWGP  MHWGHAVSAD60
LRNWQHLPPA  LVPDEKGMCF  SGSAVIDWKN  SSGLFNDSEQ  PGVIALYTAC  IAPSNGTDGE120
QMQSLAYSRD  GGFSWEKLEQ  NPILANPGLK  DFRDPKVIWH  EESQHWIMVI  TEGQEIGFYR180
SGDLNVWEKI  STFGLEEGAH  DPLPWECPDL  FPIQLEGSDE  TYWVLIVGVQ  GCSFAGGSGT240
QYFIGQFDGE  NFVNHHEPET  VLWLDYGRDY  YAAQTWSDVA  DGSRVAIAWM  SNWQYANEVP300
TRNWRSAMSA  PRSMKLCKTD  AGLRLLSEIP  KEWGLEMERQ  THPASGTSLN  QGHSLKLSNS360
YQAGVVDATL  IFEIGSELKI  APFGNESLVY  IVCRSEAGYH  LTTKRVIADE  GEENYQKTFA420
SDVMLDLPQN  DELNLVALID  RCSSEHLLQQ  GEFCVTDLSF  DSYVSGYELT  CIKGAVKLER480
LNFCAQSVGN  PTTKAA496

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(14-325)

MQQLAKDPYR  PTMHFTPPFG  WMNDPNGLVY  INNEYHLFYQ  YFPYANKWGP  MHWGHAVSAD60
LRNWQHLPPA  LVPDEKGMCF  SGSAVIDWKN  SSGLFNDSEQ  PGVIALYTAC  IAPSNGTDGE120
QMQSLAYSRD  GGFSWEKLEQ  NPILANPGLK  DFRDPKVIWH  EESQHWIMVI  TEGQEIGFYR180
SGDLNVWEKI  STFGLEEGAH  DPLPWECPDL  FPIQLEGSDE  TYWVLIVGVQ  GCSFAGGSGT240
QYFIGQFDGE  NFVNHHEPET  VLWLDYGRDY  YAAQTWSDVA  DGSRVAIAWM  SNWQYANEVP300
TRNWRSAMSA  PRSMKLCKTD  AGLRLLSEIP  KEWGLEMERQ  THPASGTSLN  QGHSLKLSNS360
YQAGVVDATL  IFEIGSELKI  APFGNESLVY  IVCRSEAGYH  LTTKRVIADE  GEENYQKTFA420
SDVMLDLPQN  DELNLVALID  RCSSEHLLQQ  GEFCVTDLSF  DSYVSGYELT  CIKGAVKLER480
LNFCAQSVGN  PTTKAA496

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help