CAZyme3D

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Entry ID

Information for CAZyme ID: WFD08412.1

Basic Information

GenBank IDWFD08412.1
FamilyGH5_12
Sequence Length732
UniProt IDA0A2N1J7K2(97.1,100)Download
Average pLDDT?87.38
CAZy50 ID34874
CAZy50 RepYes, WFD08412.1
Structure ClusterSC_GH5_clus9
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2020962
KingdomEukaryota
PhylumBasidiomycota
ClassMalasseziomycetes
OrderMalasseziales
FamilyMalasseziaceae
GenusMalassezia
SpeciesMalassezia vespertilionis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTPTLAASDI  FFRDEHGRSV  LLRGINFTGN  NKMPCGIQTQ  DRNAHLEPSD  TFVNPCVSLD60
DGAADTHLRR  IRSWGMNCLR  YIFTWEAIEH  EGPGIYDESF  LAYTVAVLRR  AKAHGFLVIM120
DPHQDVFSRA  LSGSGAPLWT  ILAANMEPRN  FSCTHAAIIH  AEYPDAENPN  PASSPPMIWA180
SNYDRIASLT  LFTLFFGGRM  YAPKCILDGE  NIQDWLQRHY  FAAVQQLIMA  VRDAGDLFDT240
CVIGWDSLNE  PHSGIIGCAT  LEAYPGMLRL  GSAPTIHEGL  ILGSGQPVRA  PTYIFTRIGP300
IKTGSKRIDP  QGRSMWLTPE  QDAVRGAGRF  GWRRDPSWTH  GCVWELHGVW  DSRTKALLKP360
SYFAAGNFLK  DHWLPHWEAY  EAIVRALHPG  AIQIVQPPVF  HAPPRGMDTV  CGTHACCSAH420
FYDGLTLMTK  HWNWYGVDGF  GLMRDNYRHR  LFAFFFGPRG  IRKALKRQLA  YLHKDTLDYM480
GNYPLWLGET  GIPFDMDHKD  AYYKHIGDYT  SQARAMNATL  DAADSTLLSY  AIWNYAPLHS540
FAWGDGWDGE  DFSVWSPDEA  ARQPAMAPAL  DKLVRGTRAI  ESWCRPYAVS  VPGELLELTF600
DMRSSFLKVS  LRTPKHGLDT  PEALRAVLFL  PYVHYGAPLP  TATWGTWIRR  WAPWSRRGYK660
SVLPRGAIDV  NALEALSPEE  EAALRLSLRV  NVSDGQWSVE  GQYLTWAVDP  AHTHHTIALS720
RAPGPADYAQ  FM732

Predicted 3D structure by AlphaFold2 with pLDDT = 87.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTPTLAASDI  FFRDEHGRSV  LLRGINFTGN  NKMPCGIQTQ  DRNAHLEPSD  TFVNPCVSLD60
DGAADTHLRR  IRSWGMNCLR  YIFTWEAIEH  EGPGIYDESF  LAYTVAVLRR  AKAHGFLVIM120
DPHQDVFSRA  LSGSGAPLWT  ILAANMEPRN  FSCTHAAIIH  AEYPDAENPN  PASSPPMIWA180
SNYDRIASLT  LFTLFFGGRM  YAPKCILDGE  NIQDWLQRHY  FAAVQQLIMA  VRDAGDLFDT240
CVIGWDSLNE  PHSGIIGCAT  LEAYPGMLRL  GSAPTIHEGL  ILGSGQPVRA  PTYIFTRIGP300
IKTGSKRIDP  QGRSMWLTPE  QDAVRGAGRF  GWRRDPSWTH  GCVWELHGVW  DSRTKALLKP360
SYFAAGNFLK  DHWLPHWEAY  EAIVRALHPG  AIQIVQPPVF  HAPPRGMDTV  CGTHACCSAH420
FYDGLTLMTK  HWNWYGVDGF  GLMRDNYRHR  LFAFFFGPRG  IRKALKRQLA  YLHKDTLDYM480
GNYPLWLGET  GIPFDMDHKD  AYYKHIGDYT  SQARAMNATL  DAADSTLLSY  AIWNYAPLHS540
FAWGDGWDGE  DFSVWSPDEA  ARQPAMAPAL  DKLVRGTRAI  ESWCRPYAVS  VPGELLELTF600
DMRSSFLKVS  LRTPKHGLDT  PEALRAVLFL  PYVHYGAPLP  TATWGTWIRR  WAPWSRRGYK660
SVLPRGAIDV  NALEALSPEE  EAALRLSLRV  NVSDGQWSVE  GQYLTWAVDP  AHTHHTIALS720
RAPGPADYAQ  FM732

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_12(14-538)

MTPTLAASDI  FFRDEHGRSV  LLRGINFTGN  NKMPCGIQTQ  DRNAHLEPSD  TFVNPCVSLD60
DGAADTHLRR  IRSWGMNCLR  YIFTWEAIEH  EGPGIYDESF  LAYTVAVLRR  AKAHGFLVIM120
DPHQDVPRNF  SCTHAAIIHA  EYPDAENPNP  ASSPPMIWAS  NYDRIASLTL  FTLFFGGRMY180
APKCILDGEN  IQDWLQRHYF  AAVQQLIMAV  RDAGDLFDTC  VIGWDSLNEP  HSGIIGCATL240
EAYPGMLRLG  SAPTIHEGLI  LGSGQPVRAP  TYIFTRIGPI  KTGSKRIDPQ  GRSMWLTPEQ300
DAVRGAGRFG  WRRDPSWTHG  CVWELHGVWD  SRTKALLKPS  YFAAGNFLKD  HWLPHWEAYE360
AIVRALHPGA  IQIVQPPVFH  APPRGMDTVC  GTHACCSAHF  YDGLTLMTKH  WNWYGVDGFG420
LMRDNYRHRL  FAFFFGPRGI  RKALKRQLAY  LHKDTLDYMG  NYPLWLGETG  IPFDMDHKDA480
YYKHIGDYTS  QARAMNATLD  AADSTLLSYA  IWNYAPLHSF  AWGDGWDGED  FSVWSPDEAA540
RQPAMAPALD  KLVRGTRAIE  SWCRPYAVSV  PGELLELTFD  MRSSFLKVSL  RTPKHGLDTP600
EALRAVLFLP  YVHYGAPLPT  ATWGTWIRRW  APWSRRGYKS  VLPRGAIDVN  ALEALSPEEE660
AALRLSLRVN  VSDGQWSVEG  QYLTWAVDPA  HTHHTIALSR  APGPADYAQF  M711

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help