CAZyme3D

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Entry ID

Information for CAZyme ID: WEW61529.1

Basic Information

GenBank IDWEW61529.1
FamilyAA3_2
Sequence Length310
UniProt IDWEW61529.1(MOD)Download
Average pLDDT?85.69
CAZy50 ID151853
CAZy50 RepYes, WEW61529.1
Structure ClusterSC_AA3_clus132
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2070801
KingdomEukaryota
PhylumAscomycota
ClassEurotiomycetes
OrderOnygenales
Family
GenusEmydomyces
SpeciesEmydomyces testavorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSSHSDNPGD  FASREYDYVV  VGGGTAGLVV  AARLSEDPHL  KVAVIEAGPA  AFDEPLINDP60
YRFGQSIGTK  YDWQFETVPQ  PGLADRKLPW  PRGKVLGGTS  ALNFMAWTRG  HKEDYDAWVE120
MGNKGWGWDD  LLFVMAGCSR  PYFKKSETFY  APTRAVQDEH  LSFFEAAWHG  IDGPMKTSHA180
LEYSPSLKYW  HRTLENLGIE  TSPDSLSGAN  AEAVTNEILL  EKEDGEWTAK  GVRVKCGGEE240
FIVKASKEVI  ISAGSVQSPQ  LLELSGIGNP  KILEVAGIQT  KVCNPNVGEN  LQDHLCKSVP300
YQAGQGVPDH  310

Predicted 3D structure by AlphaFold2 with pLDDT = 85.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSSHSDNPGD  FASREYDYVV  VGGGTAGLVV  AARLSEDPHL  KVAVIEAGPA  AFDEPLINDP60
YRFGQSIGTK  YDWQFETVPQ  PGLADRKLPW  PRGKVLGGTS  ALNFMAWTRG  HKEDYDAWVE120
MGNKGWGWDD  LLFVMAGCSR  PYFKKSETFY  APTRAVQDEH  LSFFEAAWHG  IDGPMKTSHA180
LEYSPSLKYW  HRTLENLGIE  TSPDSLSGAN  AEAVTNEILL  EKEDGEWTAK  GVRVKCGGEE240
FIVKASKEVI  ISAGSVQSPQ  LLELSGIGNP  KILEVAGIQT  KVCNPNVGEN  LQDHLCKSVP300
YQAGQGVPDH  310

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MSSHSDNPGD  FASREYDYVV  VGGGTAGLVV  AARLSEDPHL  KVAVIEAGPA  AFDEPLINDP60
YRFGQSIGTK  YDWQFETVPQ  PGLADRKLPW  PRGKVLGGTS  ALNFMAWTRG  HKEDYDAWVE120
MGNKGWGWDD  LLFVMAGCSR  PYFKKSETFY  APTRAVQDEH  LSFFEAAWHG  IDGPMKTSHA180
LEYSPSLKYW  HRTLENLGIE  TSPDSLSGAN  AEAVTNEILL  EKEDGEWTAK  GVRVKCGGEE240
FIVKASKEVI  ISAGSVQSPQ  LLELSGIGNP  KILEVAGIQT  KVCNPNVGEN  LQDHLCKSVP300
YQAGQGVPDH  310

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help