CAZyme3D

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Entry ID

Information for CAZyme ID: WEI48467.1

Basic Information

GenBank IDWEI48467.1
FamilyAA3_2
Sequence Length580
UniProt IDWEI48467.1(MOD)Download
Average pLDDT?93.42
CAZy50 ID55219
CAZy50 RepYes, WEI48467.1
Structure ClusterSC_AA3_clus94
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID173187
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderXylariales
FamilySporocadaceae
GenusPestalotiopsis
SpeciesPestalotiopsis rhododendri

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARQLLSIKA  LSALLALQSS  PAAAAVVDYV  IVGGGPAGLV  VAEQLSSKGN  VSVIVLEAGP60
DVQTDPAVET  PGRLIEVTTH  LEDRLWNYFS  QPDDNLAGNA  PELWQAKALG  GGTAVNSMTY120
CRGAASVFDE  WAEISGNSGL  AWDSLLDDFK  ATAHYTEQDL  DYDQVVDTSV  YGNGPLEVTR180
VKNLTGLEIP  ITKEMESVFN  LPEIDMTDGT  GVGVDVGLSS  IKASNRTRSY  AGNTYTWLMG240
GRSNVQILSN  SWVQRIGFDE  QTAVNVTYIN  TETNEVTVLE  AKEIILAAGA  LNTPKLLLQS300
GVGPKDNLTA  LNIDVVADVP  GIGAKLYDHH  ASYVQVEVTA  DIETMWQYLN  NATETNIAVQ360
EYAADTSGPL  SGPFGEAYGA  ARLPDSAFDG  VDATYYTSLP  SDRPHVLWHY  SAVAFFANSP420
NTSIVSLAPT  LVQPEAHGYL  TINSSDYTAA  PLLFSNYYGS  AADKAAIIYG  IKQARAIFQA480
DSLSQWVIDE  VYPGPNVTSD  DAIWQAIQAG  STSFHHPVGT  VPLGDVVGKD  WRVTGLKGLR540
VVDSSAMPTL  PSCHIQGPVY  AFAHRAAQDI  MAADGLSGSY  580

Predicted 3D structure by AlphaFold2 with pLDDT = 93.42 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MARQLLSIKA  LSALLALQSS  PAAAAVVDYV  IVGGGPAGLV  VAEQLSSKGN  VSVIVLEAGP60
DVQTDPAVET  PGRLIEVTTH  LEDRLWNYFS  QPDDNLAGNA  PELWQAKALG  GGTAVNSMTY120
CRGAASVFDE  WAEISGNSGL  AWDSLLDDFK  ATAHYTEQDL  DYDQVVDTSV  YGNGPLEVTR180
VKNLTGLEIP  ITKEMESVFN  LPEIDMTDGT  GVGVDVGLSS  IKASNRTRSY  AGNTYTWLMG240
GRSNVQILSN  SWVQRIGFDE  QTAVNVTYIN  TETNEVTVLE  AKEIILAAGA  LNTPKLLLQS300
GVGPKDNLTA  LNIDVVADVP  GIGAKLYDHH  ASYVQVEVTA  DIETMWQYLN  NATETNIAVQ360
EYAADTSGPL  SGPFGEAYGA  ARLPDSAFDG  VDATYYTSLP  SDRPHVLWHY  SAVAFFANSP420
NTSIVSLAPT  LVQPEAHGYL  TINSSDYTAA  PLLFSNYYGS  AADKAAIIYG  IKQARAIFQA480
DSLSQWVIDE  VYPGPNVTSD  DAIWQAIQAG  STSFHHPVGT  VPLGDVVGKD  WRVTGLKGLR540
VVDSSAMPTL  PSCHIQGPVY  AFAHRAAQDI  MAADGLSGSY  580

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(28-571)

MARQLLSIKA  LSALLALQSS  PAAAAVVDYV  IVGGGPAGLV  VAEQLSSKGN  VSVIVLEAGP60
DVQTDPAVET  PGRLIEVTTH  LEDRLWNYFS  QPDDNLAGNA  PELWQAKALG  GGTAVNSMTY120
CRGAASVFDE  WAEISGNSGL  AWDSLLDDFK  ATAHYTEQDL  DYDQVVDTSV  YGNGPLEVTR180
VKNLTGLEIP  ITKEMESVFN  LPEIDMTDGT  GVGVDVGLSS  IKASNRTRSY  AGNTYTWLMG240
GRSNVQILSN  SWVQRIGFDE  QTAVNVTYIN  TETNEVTVLE  AKEIILAAGA  LNTPKLLLQS300
GVGPKDNLTA  LNIDVVADVP  GIGAKLYDHH  ASYVQVEVTA  DIETMWQYLN  NATETNIAVQ360
EYAADTSGPL  SGPFGEAYGA  ARLPDSAFDG  VDATYYTSLP  SDRPHVLWHY  SAVAFFANSP420
NTSIVSLAPT  LVQPEAHGYL  TINSSDYTAA  PLLFSNYYGS  AADKAAIIYG  IKQARAIFQA480
DSLSQWVIDE  VYPGPNVTSD  DAIWQAIQAG  STSFHHPVGT  VPLGDVVGKD  WRVTGLKGLR540
VVDSSAMPTL  PSCHIQGPVY  AFAHRAAQDI  MAADGLSGSY  580

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help