CAZyme3D

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Entry ID

Information for CAZyme ID: WED66706.1

Basic Information

GenBank IDWED66706.1
FamilyGT2
Sequence Length693
UniProt IDWED66706.1(MOD)Download
Average pLDDT?90.18
CAZy50 ID39595
CAZy50 RepYes, WED66706.1
Structure ClusterSC_GT2_clus909
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2909285
KingdomBacteria
PhylumVerrucomicrobiota
ClassOpitutae
OrderOpitutales
FamilyOpitutaceae
GenusSynoicihabitans
SpeciesSynoicihabitans lomoniglobus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSIVPSVFQR  PGFKRAVFYL  LILTLTAVAT  VLFGNLLHRA  GVGAEYHALT  VLFGLLFWGI60
AAGAVHAIFG  FGCRLRPPVA  VREKSREDPA  PERGKTVVVL  PIFNEDPSRV  FAGLEAIYRS120
LARTDEAADF  DFFVLSDSNQ  PTCWIREEVT  WARLCRELNA  FGRIHYRRRK  INQDKKAGNI180
QEFCENWGGR  YRYMVTLDAD  SVMTGETLVE  LRRRMEIDPR  LGILQTSPRI  IFAQTLWGRL240
QQFSNHFLGP  LFVAGLDFWQ  QDDGSYWGHN  AIIRMDAFLA  HCALPDLPGR  EPFGGKILSH300
DFVEAALMRR  AGYHVRLATD  LTGSYEECPP  DIIEHAKRDR  RWCQGNMQHI  WLLFSRELPR360
ISRIHLANGI  MGYASSLLWA  MFLILGGIYA  FNRTRSDLSV  LPIPFLHGWG  ELSLSAHALL420
TFGFTFACIF  LPKVLALIDA  ALHPRRAAGF  GGVGRSAASL  LIETVFSVFS  APILMIYHSR480
FVLATAFGRG  VTWTTQRRNA  DVGQSFAFSL  RAHGGQALIG  LTAAILAGRV  DDRLFYWSLP540
LTAALVLAPV  YSWLVSRQDA  GQFLAELGLL  STPEERQLPV  ELSETIARTT  AMKNDTLLVT600
GSELQGVIVD  PYCNAIRAAL  AERDSEVDSS  AAHAAGQHAL  VAGIDALEAR  ELGLLLGDSA660
ALEETHRIAW  LTDPADLHPS  WRPSFQRYGL  EAI693

Predicted 3D structure by AlphaFold2 with pLDDT = 90.18 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSIVPSVFQR  PGFKRAVFYL  LILTLTAVAT  VLFGNLLHRA  GVGAEYHALT  VLFGLLFWGI60
AAGAVHAIFG  FGCRLRPPVA  VREKSREDPA  PERGKTVVVL  PIFNEDPSRV  FAGLEAIYRS120
LARTDEAADF  DFFVLSDSNQ  PTCWIREEVT  WARLCRELNA  FGRIHYRRRK  INQDKKAGNI180
QEFCENWGGR  YRYMVTLDAD  SVMTGETLVE  LRRRMEIDPR  LGILQTSPRI  IFAQTLWGRL240
QQFSNHFLGP  LFVAGLDFWQ  QDDGSYWGHN  AIIRMDAFLA  HCALPDLPGR  EPFGGKILSH300
DFVEAALMRR  AGYHVRLATD  LTGSYEECPP  DIIEHAKRDR  RWCQGNMQHI  WLLFSRELPR360
ISRIHLANGI  MGYASSLLWA  MFLILGGIYA  FNRTRSDLSV  LPIPFLHGWG  ELSLSAHALL420
TFGFTFACIF  LPKVLALIDA  ALHPRRAAGF  GGVGRSAASL  LIETVFSVFS  APILMIYHSR480
FVLATAFGRG  VTWTTQRRNA  DVGQSFAFSL  RAHGGQALIG  LTAAILAGRV  DDRLFYWSLP540
LTAALVLAPV  YSWLVSRQDA  GQFLAELGLL  STPEERQLPV  ELSETIARTT  AMKNDTLLVT600
GSELQGVIVD  PYCNAIRAAL  AERDSEVDSS  AAHAAGQHAL  VAGIDALEAR  ELGLLLGDSA660
ALEETHRIAW  LTDPADLHPS  WRPSFQRYGL  EAI693

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(98-278)

MSIVPSVFQR  PGFKRAVFYL  LILTLTAVAT  VLFGNLLHRA  GVGAEYHALT  VLFGLLFWGI60
AAGAVHAIFG  FGCRLRPPVA  VREKSREDPA  PERGKTVVVL  PIFNEDPSRV  FAGLEAIYRS120
LARTDEAADF  DFFVLSDSNQ  PTCWIREEVT  WARLCRELNA  FGRIHYRRRK  INQDKKAGNI180
QEFCENWGGR  YRYMVTLDAD  SVMTGETLVE  LRRRMEIDPR  LGILQTSPRI  IFAQTLWGRL240
QQFSNHFLGP  LFVAGLDFWQ  QDDGSYWGHN  AIIRMDAFLA  HCALPDLPGR  EPFGGKILSH300
DFVEAALMRR  AGYHVRLATD  LTGSYEECPP  DIIEHAKRDR  RWCQGNMQHI  WLLFSRELPR360
ISRIHLANGI  MGYASSLLWA  MFLILGGIYA  FNRTRSDLSV  LPIPFLHGWG  ELSLSAHALL420
TFGFTFACIF  LPKVLALIDA  ALHPRRAAGF  GGVGRSAASL  LIETVFSVFS  APILMIYHSR480
FVLATAFGRG  VTWTTQRRNA  DVGQSFAFSL  RAHGGQALIG  LTAAILAGRV  DDRLFYWSLP540
LTAALVLAPV  YSWLVSRQDA  GQFLAELGLL  STPEERQLPV  ELSETIARTT  AMKNDTLLVT600
GSELQGVIVD  PYCNAIRAAL  AERDSEVDSS  AAHAAGQHAL  VAGIDALEAR  ELGLLLGDSA660
ALEETHRIAW  LTDPADLHPS  WRPSFQRYGL  EAI693

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help