Information for CAZyme ID: WED66706.1
Basic Information
GenBank ID | WED66706.1 |
Family | GT2 |
Sequence Length | 693 |
UniProt ID | WED66706.1(MOD)![]() |
Average pLDDT? | 90.18 |
CAZy50 ID | 39595 |
CAZy50 Rep | Yes, WED66706.1 |
Structure Cluster | SC_GT2_clus909 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2909285 |
Kingdom | Bacteria |
Phylum | Verrucomicrobiota |
Class | Opitutae |
Order | Opitutales |
Family | Opitutaceae |
Genus | Synoicihabitans |
Species | Synoicihabitans lomoniglobus |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MSIVPSVFQR PGFKRAVFYL LILTLTAVAT VLFGNLLHRA GVGAEYHALT VLFGLLFWGI | 60 |
AAGAVHAIFG FGCRLRPPVA VREKSREDPA PERGKTVVVL PIFNEDPSRV FAGLEAIYRS | 120 |
LARTDEAADF DFFVLSDSNQ PTCWIREEVT WARLCRELNA FGRIHYRRRK INQDKKAGNI | 180 |
QEFCENWGGR YRYMVTLDAD SVMTGETLVE LRRRMEIDPR LGILQTSPRI IFAQTLWGRL | 240 |
QQFSNHFLGP LFVAGLDFWQ QDDGSYWGHN AIIRMDAFLA HCALPDLPGR EPFGGKILSH | 300 |
DFVEAALMRR AGYHVRLATD LTGSYEECPP DIIEHAKRDR RWCQGNMQHI WLLFSRELPR | 360 |
ISRIHLANGI MGYASSLLWA MFLILGGIYA FNRTRSDLSV LPIPFLHGWG ELSLSAHALL | 420 |
TFGFTFACIF LPKVLALIDA ALHPRRAAGF GGVGRSAASL LIETVFSVFS APILMIYHSR | 480 |
FVLATAFGRG VTWTTQRRNA DVGQSFAFSL RAHGGQALIG LTAAILAGRV DDRLFYWSLP | 540 |
LTAALVLAPV YSWLVSRQDA GQFLAELGLL STPEERQLPV ELSETIARTT AMKNDTLLVT | 600 |
GSELQGVIVD PYCNAIRAAL AERDSEVDSS AAHAAGQHAL VAGIDALEAR ELGLLLGDSA | 660 |
ALEETHRIAW LTDPADLHPS WRPSFQRYGL EAI | 693 |
Predicted 3D structure by AlphaFold2 with pLDDT = 90.18 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MSIVPSVFQR PGFKRAVFYL LILTLTAVAT VLFGNLLHRA GVGAEYHALT VLFGLLFWGI | 60 |
AAGAVHAIFG FGCRLRPPVA VREKSREDPA PERGKTVVVL PIFNEDPSRV FAGLEAIYRS | 120 |
LARTDEAADF DFFVLSDSNQ PTCWIREEVT WARLCRELNA FGRIHYRRRK INQDKKAGNI | 180 |
QEFCENWGGR YRYMVTLDAD SVMTGETLVE LRRRMEIDPR LGILQTSPRI IFAQTLWGRL | 240 |
QQFSNHFLGP LFVAGLDFWQ QDDGSYWGHN AIIRMDAFLA HCALPDLPGR EPFGGKILSH | 300 |
DFVEAALMRR AGYHVRLATD LTGSYEECPP DIIEHAKRDR RWCQGNMQHI WLLFSRELPR | 360 |
ISRIHLANGI MGYASSLLWA MFLILGGIYA FNRTRSDLSV LPIPFLHGWG ELSLSAHALL | 420 |
TFGFTFACIF LPKVLALIDA ALHPRRAAGF GGVGRSAASL LIETVFSVFS APILMIYHSR | 480 |
FVLATAFGRG VTWTTQRRNA DVGQSFAFSL RAHGGQALIG LTAAILAGRV DDRLFYWSLP | 540 |
LTAALVLAPV YSWLVSRQDA GQFLAELGLL STPEERQLPV ELSETIARTT AMKNDTLLVT | 600 |
GSELQGVIVD PYCNAIRAAL AERDSEVDSS AAHAAGQHAL VAGIDALEAR ELGLLLGDSA | 660 |
ALEETHRIAW LTDPADLHPS WRPSFQRYGL EAI | 693 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.