CAZyme3D

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Entry ID

Information for CAZyme ID: WED66155.1

Basic Information

GenBank IDWED66155.1
FamilyCBM50
Sequence Length394
UniProt IDWED66155.1(MOD)Download
Average pLDDT?63.77
CAZy50 ID102602
CAZy50 RepYes, WED66155.1
Structure ClusterSC_CBM50_clus26, SC_CBM50_clus27
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2909285
KingdomBacteria
PhylumVerrucomicrobiota
ClassOpitutae
OrderOpitutales
FamilyOpitutaceae
GenusSynoicihabitans
SpeciesSynoicihabitans lomoniglobus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKLLNILGAV  VALHIAVLVL  AIAIPGCRTT  DHANSTTTAV  NDGAPEGDAY  PASSTPGGTF60
SAAPELTDRD  LNPPLATASQ  PTFDPNAPAV  AANSLSTGGT  RYSPTRPGST  VATAMQPTAS120
VDVMPAATYT  VKRGDSLWAL  AKKNNVSVRE  LAAANNLAPD  AGLRLDQVIV  IPGKVAAPVP180
PSRESGSKAS  SAPETIYVIK  SGDTLGKIAR  LNGTTVAKLK  AFNNLSSDLV  RVGDRLVIPD240
APASATSSAS  ATTAESTAST  PAAPPPAKGS  YKHVVASGES  LTVIARRYGV  KMGDVALANQ300
IRDPSLIRPG  QELVIPGWDA  PPPAAKPTTS  AATTTSRPTT  SSVSDDTDLD  DGLETMSLDE360
VPVIQVQSVP  EEDEEPIRTI  NVGGQNTDGP  PEFR394

Predicted 3D structure by AlphaFold2 with pLDDT = 63.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKLLNILGAV  VALHIAVLVL  AIAIPGCRTT  DHANSTTTAV  NDGAPEGDAY  PASSTPGGTF60
SAAPELTDRD  LNPPLATASQ  PTFDPNAPAV  AANSLSTGGT  RYSPTRPGST  VATAMQPTAS120
VDVMPAATYT  VKRGDSLWAL  AKKNNVSVRE  LAAANNLAPD  AGLRLDQVIV  IPGKVAAPVP180
PSRESGSKAS  SAPETIYVIK  SGDTLGKIAR  LNGTTVAKLK  AFNNLSSDLV  RVGDRLVIPD240
APASATSSAS  ATTAESTAST  PAAPPPAKGS  YKHVVASGES  LTVIARRYGV  KMGDVALANQ300
IRDPSLIRPG  QELVIPGWDA  PPPAAKPTTS  AATTTSRPTT  SSVSDDTDLD  DGLETMSLDE360
VPVIQVQSVP  EEDEEPIRTI  NVGGQNTDGP  PEFR394

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM50(129-172)+CBM50(197-239)+CBM50(273-316)

MKLLNILGAV  VALHIAVLVL  AIAIPGCRTT  DHANSTTTAV  NDGAPEGDAY  PASSTPGGTF60
SAAPELTDRD  LNPPLATASQ  PTFDPNAPAV  AANSLSTGGT  RYSPTRPGST  VATAMQPTAS120
VDVMPAATYT  VKRGDSLWAL  AKKNNVSVRE  LAAANNLAPD  AGLRLDQVIV  IPGKVAAPVP180
PSRESGSKAS  SAPETIYVIK  SGDTLGKIAR  LNGTTVAKLK  AFNNLSSDLV  RVGDRLVIPD240
APASATSSAS  ATTAESTAST  PAAPPPAKGS  YKHVVASGES  LTVIARRYGV  KMGDVALANQ300
IRDPSLIRPG  QELVIPGWDA  PPPAAKPTTS  AATTTSRPTT  SSVSDDTDLD  DGLETMSLDE360
VPVIQVQSVP  EEDEEPIRTI  NVGGQNTDGP  PEFR394

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help