CAZyme3D

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Entry ID

Information for CAZyme ID: WED66121.1

Basic Information

GenBank IDWED66121.1
FamilyGH166
Sequence Length941
UniProt IDWED66121.1(MOD)Download
Average pLDDT?92.62
CAZy50 ID17097
CAZy50 RepYes, WED66121.1
Structure ClusterSC_GH166_clus15
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2909285
KingdomBacteria
PhylumVerrucomicrobiota
ClassOpitutae
OrderOpitutales
FamilyOpitutaceae
GenusSynoicihabitans
SpeciesSynoicihabitans lomoniglobus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNYRRFSVVF  ALVFAWWHLG  ATPTSFYVNY  DAQVPVAPLR  LHPLSIVHPE  AEVDLSAAHA60
EGNRVLAYLS  VGEIAADASY  RPEALERGLR  LRGKNEIWDS  DLIDLSDERW  VDLLVDEFAR120
AAVGRGFDGF  FLDTLDSVES  DGRAGAVALV  RRLRQLQPQA  MIVANRGFDL  LPDLQDVVDG180
VLVESVFGTF  DFNDRRYRPV  AANDTAVLVE  RLHALKSEGY  EVFVLDYADP  TDEPTARNIA240
SRIGAEGWHA  LVATPDLRGT  VLAPWRDVGR  RVFSFYGNLS  ADPTDRVQWP  AESFTGLRLQ300
AALEWLGYEV  DYGKVEAGRA  LPQLGVETVA  IILPRAWEYP  ESEESRVLDW  LVAQRESGRR360
ILIFGAVPFQ  DEAVRRRFFE  VFGIGGSGRM  IWPVRNLREV  VSDPAIMAGA  EYQSRGRPIQ420
IPDLQAPRDS  HVMRSVVAST  PTGEEVRLDA  LFATGWGGVA  LDPYLTFQRP  DFQELWQFDL480
FAYLEAVLGR  LPGPVPDATT  REGRRMLMSH  IDGDGFINRS  EVEVGHSSAQ  VVRDHILTQY540
PIPITVSVVE  AEVTGAVKGS  SPEAARQFER  TARSIFALPN  VQVASHSYSH  PFMWIANDRN600
AGLYDRPNLE  LNVPYPNMDL  EREIAGSVDY  INRTLAPPDK  PVEVFLWSGN  CRPPPTALRQ660
VRELGLLAMN  GGDTVISRRT  PTLNGVAPRT  MPWHDELQVF  APAQNENVYT  NNWRGPFFGT720
FIHVIDTFER  TESPRRLKPV  DIYYHFYSGD  YFASLRALET  VHDWAMAQPL  HAMKVSDYIR780
IAQDARAVRV  YSNAEDSWAL  VGDGALRSYR  VPAAWAPRID  LTASSGITGW  SVQGAEAFVH840
TTGRRVTQLV  LAPAEDEPST  RARLESSTGG  IEFTDRRARR  LHFAVRDLRP  VTVVLAGWPS900
DIELEVEVDD  TRSRMRSGVD  GRVTLSLPAV  AEVRVEAAPA  P941

Predicted 3D structure by AlphaFold2 with pLDDT = 92.62 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNYRRFSVVF  ALVFAWWHLG  ATPTSFYVNY  DAQVPVAPLR  LHPLSIVHPE  AEVDLSAAHA60
EGNRVLAYLS  VGEIAADASY  RPEALERGLR  LRGKNEIWDS  DLIDLSDERW  VDLLVDEFAR120
AAVGRGFDGF  FLDTLDSVES  DGRAGAVALV  RRLRQLQPQA  MIVANRGFDL  LPDLQDVVDG180
VLVESVFGTF  DFNDRRYRPV  AANDTAVLVE  RLHALKSEGY  EVFVLDYADP  TDEPTARNIA240
SRIGAEGWHA  LVATPDLRGT  VLAPWRDVGR  RVFSFYGNLS  ADPTDRVQWP  AESFTGLRLQ300
AALEWLGYEV  DYGKVEAGRA  LPQLGVETVA  IILPRAWEYP  ESEESRVLDW  LVAQRESGRR360
ILIFGAVPFQ  DEAVRRRFFE  VFGIGGSGRM  IWPVRNLREV  VSDPAIMAGA  EYQSRGRPIQ420
IPDLQAPRDS  HVMRSVVAST  PTGEEVRLDA  LFATGWGGVA  LDPYLTFQRP  DFQELWQFDL480
FAYLEAVLGR  LPGPVPDATT  REGRRMLMSH  IDGDGFINRS  EVEVGHSSAQ  VVRDHILTQY540
PIPITVSVVE  AEVTGAVKGS  SPEAARQFER  TARSIFALPN  VQVASHSYSH  PFMWIANDRN600
AGLYDRPNLE  LNVPYPNMDL  EREIAGSVDY  INRTLAPPDK  PVEVFLWSGN  CRPPPTALRQ660
VRELGLLAMN  GGDTVISRRT  PTLNGVAPRT  MPWHDELQVF  APAQNENVYT  NNWRGPFFGT720
FIHVIDTFER  TESPRRLKPV  DIYYHFYSGD  YFASLRALET  VHDWAMAQPL  HAMKVSDYIR780
IAQDARAVRV  YSNAEDSWAL  VGDGALRSYR  VPAAWAPRID  LTASSGITGW  SVQGAEAFVH840
TTGRRVTQLV  LAPAEDEPST  RARLESSTGG  IEFTDRRARR  LHFAVRDLRP  VTVVLAGWPS900
DIELEVEVDD  TRSRMRSGVD  GRVTLSLPAV  AEVRVEAAPA  P941

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH166(52-257)+CE4(535-668)

MNYRRFSVVF  ALVFAWWHLG  ATPTSFYVNY  DAQVPVAPLR  LHPLSIVHPE  AEVDLSAAHA60
EGNRVLAYLS  VGEIAADASY  RPEALERGLR  LRGKNEIWDS  DLIDLSDERW  VDLLVDEFAR120
AAVGRGFDGF  FLDTLDSVES  DGRAGAVALV  RRLRQLQPQA  MIVANRGFDL  LPDLQDVVDG180
VLVESVFGTF  DFNDRRYRPV  AANDTAVLVE  RLHALKSEGY  EVFVLDYADP  TDEPTARNIA240
SRIGAEGWHA  LVATPDLRGT  VLAPWRDVGR  RVFSFYGNLS  ADPTDRVQWP  AESFTGLRLQ300
AALEWLGYEV  DYGKVEAGRA  LPQLGVETVA  IILPRAWEYP  ESEESRVLDW  LVAQRESGRR360
ILIFGAVPFQ  DEAVRRRFFE  VFGIGGSGRM  IWPVRNLREV  VSDPAIMAGA  EYQSRGRPIQ420
IPDLQAPRDS  HVMRSVVAST  PTGEEVRLDA  LFATGWGGVA  LDPYLTFQRP  DFQELWQFDL480
FAYLEAVLGR  LPGPVPDATT  REGRRMLMSH  IDGDGFINRS  EVEVGHSSAQ  VVRDHILTQY540
PIPITVSVVE  AEVTGAVKGS  SPEAARQFER  TARSIFALPN  VQVASHSYSH  PFMWIANDRN600
AGLYDRPNLE  LNVPYPNMDL  EREIAGSVDY  INRTLAPPDK  PVEVFLWSGN  CRPPPTALRQ660
VRELGLLAMN  GGDTVISRRT  PTLNGVAPRT  MPWHDELQVF  APAQNENVYT  NNWRGPFFGT720
FIHVIDTFER  TESPRRLKPV  DIYYHFYSGD  YFASLRALET  VHDWAMAQPL  HAMKVSDYIR780
IAQDARAVRV  YSNAEDSWAL  VGDGALRSYR  VPAAWAPRID  LTASSGITGW  SVQGAEAFVH840
TTGRRVTQLV  LAPAEDEPST  RARLESSTGG  IEFTDRRARR  LHFAVRDLRP  VTVVLAGWPS900
DIELEVEVDD  TRSRMRSGVD  GRVTLSLPAV  AEVRVEAAPA  P941

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help