CAZyme3D

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Entry ID

Information for CAZyme ID: WED64206.1

Basic Information

GenBank IDWED64206.1
FamilyGH0
Sequence Length721
UniProt IDWED64206.1(MOD)Download
Average pLDDT?92.68
CAZy50 ID36175
CAZy50 RepYes, WED64206.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2909285
KingdomBacteria
PhylumVerrucomicrobiota
ClassOpitutae
OrderOpitutales
FamilyOpitutaceae
GenusSynoicihabitans
SpeciesSynoicihabitans lomoniglobus
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/WED64206.1.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPTSDLNFSL  RHATFEFGWN  LTTDRARLTR  RQDASAVVWE  GTLLPLFWLQ  SKDGTRRAIK60
ATAAAETTEL  HATGGRIGLA  LADLGTGQLT  VAVDADRGGL  RFENLTLNWA  PDQSAPAIIS120
IHYGADILTP  EQRLAAPTLA  RPFWPNWRAE  GFGLPGAKTA  PMQSFFRSWD  FGQADIALGS180
FGPAMGTPYG  AAFPRPVYGA  GLGGRHGWLW  CGAGDPPDGA  LTLQVRACSG  SLEWRLREDL240
WGAPAEHERT  WTAPLTLRWA  DTLWTAIRDT  FRAFSVHDRP  RASHQKSFWG  TWGDFRAGIY300
DLPSTADRAV  DEVGANVLCI  DDPWETFKGS  CAPDPAKLPR  FDADLAYIRQ  RGLGLGIWMP360
IAWIADPEAV  GLTADDLLLN  RDGNPIRANW  ANDPLEGLNA  PCCLDPSSAA  ARQFLVERTH420
RVMRDYRPSL  LKLDFGYGVP  GPDGCAPRNP  ALRGERLSLA  LAQVIADAAR  EIDPTVTILG480
YALHPRWDAV  QDQLSLDDLG  DAGTAEAAAH  RQWSVWAALV  GARGLAIMGS  SGYDWAADPD540
VLLDSAILGA  PGANLPRLTE  TGDPVLAATM  ARRRAITRWH  RPARAWEPLW  LNSDIGQIGV600
DPDARSWGRN  ERGEDGALRL  TALALRDPLA  NPTASLPHLA  WTGRWAVLSL  TNDDVFTANE660
VVLVPFDDGR  LELARSTRPK  RIVAVGNDEE  TEFATWQWNA  GVLRVEYVAT  AEPWLGLRVI720
S721

Predicted 3D structure by AlphaFold2 with pLDDT = 92.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPTSDLNFSL  RHATFEFGWN  LTTDRARLTR  RQDASAVVWE  GTLLPLFWLQ  SKDGTRRAIK60
ATAAAETTEL  HATGGRIGLA  LADLGTGQLT  VAVDADRGGL  RFENLTLNWA  PDQSAPAIIS120
IHYGADILTP  EQRLAAPTLA  RPFWPNWRAE  GFGLPGAKTA  PMQSFFRSWD  FGQADIALGS180
FGPAMGTPYG  AAFPRPVYGA  GLGGRHGWLW  CGAGDPPDGA  LTLQVRACSG  SLEWRLREDL240
WGAPAEHERT  WTAPLTLRWA  DTLWTAIRDT  FRAFSVHDRP  RASHQKSFWG  TWGDFRAGIY300
DLPSTADRAV  DEVGANVLCI  DDPWETFKGS  CAPDPAKLPR  FDADLAYIRQ  RGLGLGIWMP360
IAWIADPEAV  GLTADDLLLN  RDGNPIRANW  ANDPLEGLNA  PCCLDPSSAA  ARQFLVERTH420
RVMRDYRPSL  LKLDFGYGVP  GPDGCAPRNP  ALRGERLSLA  LAQVIADAAR  EIDPTVTILG480
YALHPRWDAV  QDQLSLDDLG  DAGTAEAAAH  RQWSVWAALV  GARGLAIMGS  SGYDWAADPD540
VLLDSAILGA  PGANLPRLTE  TGDPVLAATM  ARRRAITRWH  RPARAWEPLW  LNSDIGQIGV600
DPDARSWGRN  ERGEDGALRL  TALALRDPLA  NPTASLPHLA  WTGRWAVLSL  TNDDVFTANE660
VVLVPFDDGR  LELARSTRPK  RIVAVGNDEE  TEFATWQWNA  GVLRVEYVAT  AEPWLGLRVI720
S721

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help