CAZyme3D

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Entry ID

Information for CAZyme ID: WED63700.1

Basic Information

GenBank IDWED63700.1
FamilyGH0
Sequence Length553
UniProt IDWED63700.1(MOD)Download
Average pLDDT?90.38
CAZy50 ID59143
CAZy50 RepYes, WED63700.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2909285
KingdomBacteria
PhylumVerrucomicrobiota
ClassOpitutae
OrderOpitutales
FamilyOpitutaceae
GenusSynoicihabitans
SpeciesSynoicihabitans lomoniglobus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MATSSPYPTR  RHHLLPVVRP  LLFGLGAALS  TAAAPFQLPD  TGAPASTTVV  LLAIDDHAFP60
LRDNLALYLT  TPTVRAEPVL  QPSVDPNAPD  NAATHFYGSV  IREENRFRMW  YYAVHTVSTE120
GAIGVSPVCY  AESIDGEIWT  RPHLGQVDWK  GNRDNNLVAL  GPDPTEACSG  VSVIRDDTDP180
DPARRYKMVF  GKQIETAAQQ  RLGVSRRWVV  RTAVSPDGLT  WTQLPQVVSG  DQFAELSSLY240
HHNGLYVVNS  HIRSHGEGDR  QEGRQGYAWV  SPDFTHWLPQ  SAPSFKTAEP  LDGAGWGTHG300
NSGDDYTQVH  LGVGATSLGN  VAIGLYGMWH  QRQPNWGEGG  ITCDLGLLLS  QDGLHFNEVV360
KGQPYLRSEQ  SPAKPVAGKA  YPTILCQTNS  ILNVGDETWI  YHGRWRNVDF  QQLGSPTNDG420
TNVAQNYWGG  VALAKLPRDR  WGALALWAES  DQGSLWTTPI  TLPAAAALTA  NAAGLSGLTF480
LVADERFNPI  EGFAAGRAPA  TDDNDQFDAA  VIWAGHDLAE  LAGQTVRLRV  SFDRGTAPNP540
QLFALNLTPS  SDE553

Predicted 3D structure by AlphaFold2 with pLDDT = 90.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MATSSPYPTR  RHHLLPVVRP  LLFGLGAALS  TAAAPFQLPD  TGAPASTTVV  LLAIDDHAFP60
LRDNLALYLT  TPTVRAEPVL  QPSVDPNAPD  NAATHFYGSV  IREENRFRMW  YYAVHTVSTE120
GAIGVSPVCY  AESIDGEIWT  RPHLGQVDWK  GNRDNNLVAL  GPDPTEACSG  VSVIRDDTDP180
DPARRYKMVF  GKQIETAAQQ  RLGVSRRWVV  RTAVSPDGLT  WTQLPQVVSG  DQFAELSSLY240
HHNGLYVVNS  HIRSHGEGDR  QEGRQGYAWV  SPDFTHWLPQ  SAPSFKTAEP  LDGAGWGTHG300
NSGDDYTQVH  LGVGATSLGN  VAIGLYGMWH  QRQPNWGEGG  ITCDLGLLLS  QDGLHFNEVV360
KGQPYLRSEQ  SPAKPVAGKA  YPTILCQTNS  ILNVGDETWI  YHGRWRNVDF  QQLGSPTNDG420
TNVAQNYWGG  VALAKLPRDR  WGALALWAES  DQGSLWTTPI  TLPAAAALTA  NAAGLSGLTF480
LVADERFNPI  EGFAAGRAPA  TDDNDQFDAA  VIWAGHDLAE  LAGQTVRLRV  SFDRGTAPNP540
QLFALNLTPS  SDE553

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH165(52-535)

MATSSPYPTR  RHHLLPVVRP  LLFGLGAALS  TAAAPFQLPD  TGAPASTTVV  LLAIDDHAFP60
LRDNLALYLT  TPTVRAEPVL  QPSVDPNAPD  NAATHFYGSV  IREENRFRMW  YYAVHTVSTE120
GAIGVSPVCY  AESIDGEIWT  RPHLGQVDWK  GNRDNNLVAL  GPDPTEACSG  VSVIRDDTDP180
DPARRYKMVF  GKQIETAAQQ  RLGVSRRWVV  RTAVSPDGLT  WTQLPQVVSG  DQFAELSSLY240
HHNGLYVVNS  HIRSHGEGDR  QEGRQGYAWV  SPDFTHWLPQ  SAPSFKTAEP  LDGAGWGTHG300
NSGDDYTQVH  LGVGATSLGN  VAIGLYGMWH  QRQPNWGEGG  ITCDLGLLLS  QDGLHFNEVV360
KGQPYLRSEQ  SPAKPVAGKA  YPTILCQTNS  ILNVGDETWI  YHGRWRNVDF  QQLGSPTNDG420
TNVAQNYWGG  VALAKLPRDR  WGALALWAES  DQGSLWTTPI  TLPAAAALTA  NAAGLSGLTF480
LVADERFNPI  EGFAAGRAPA  TDDNDQFDAA  VIWAGHDLAE  LAGQTVRLRV  SFDRGTAPNP540
QLFALNLTPS  SDE553

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help