CAZyme3D

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Entry ID

Information for CAZyme ID: WEB05407.1

Basic Information

GenBank IDWEB05407.1
FamilyCBM20
Sequence Length222
UniProt IDA0A6G4MZ61(100,100)Download
Average pLDDT?95.93
CAZy50 ID177350
CAZy50 RepYes, WEB05407.1
Structure ClusterSC_CBM20_clus10
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1328
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyStreptococcaceae
GenusStreptococcus
SpeciesStreptococcus anginosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAAGNIQVRS  DNSVTPFELK  AGSVGVWTYD  NSQTTKLSVG  DIDPSIGSVG  NEIAITGEGF60
GNKEGQVKFG  DTNAKVLSWS  DTLIKVLIPE  VAAGKYAIHV  SNLRGEKGTY  SDFEVLTGKQ120
IPVRLIADNA  QTLPGENLYV  VGNVSELGNW  DANKAIGPMF  NATASIAQYP  SWFYDINLPK180
NKNIEYKFIK  KNKDGQIIWE  SGENHKITSS  EEAQNKRASW  QN222

Predicted 3D structure by AlphaFold2 with pLDDT = 95.93 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MAAGNIQVRS  DNSVTPFELK  AGSVGVWTYD  NSQTTKLSVG  DIDPSIGSVG  NEIAITGEGF60
GNKEGQVKFG  DTNAKVLSWS  DTLIKVLIPE  VAAGKYAIHV  SNLRGEKGTY  SDFEVLTGKQ120
IPVRLIADNA  QTLPGENLYV  VGNVSELGNW  DANKAIGPMF  NATASIAQYP  SWFYDINLPK180
NKNIEYKFIK  KNKDGQIIWE  SGENHKITSS  EEAQNKRASW  QN222

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM20(122-213)

MSLLDFRFAN  SVRSLFTNPS  YTMQDFYNVI  KETESDYKEV  NDQVTFIDNH  DMSRFSTIVN60
GNRTAVNQAY  ALLLTSRGVP  TIYYGSEQYD  KGESAPYNRS  DITSFNQTTD  AYQIISKLSK120
LRKSNKALAY  GQTVERWINQ  DVLIFERHFG  NSVAIVAVNK  GDKSYHIDNL  KPHLPKGDYV180
DKLASMMAAG  NIQVRSDNSV  TPFELKAGSV  GVWTYDNSQT  TKLSVGDIDP  SIGSVGNEIA240
ITGEGFGNKE  GQVKFGDTNA  KVLSWSDTLI  KVLIPEVAAG  KYAIHVSNLR  GEKGTYSDFE300
VLTGKQIPVR  LIADNAQTLP  GENLYVVGNV  SELGNWDANK  AIGPMFNATA  SIAQYPSWFY360
DINLPKNKNI  EYKFIKKNKD  GQIIWESGEN  HKITSSEEAQ  NKRASWQN408

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help