CAZyme3D

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Entry ID

Information for CAZyme ID: WDK22041.1

Basic Information

GenBank IDWDK22041.1
FamilyAA3_2
Sequence Length374
UniProt IDWDK22041.1(MOD)Download
Average pLDDT?79.64
CAZy50 ID116848
CAZy50 RepYes, WDK22041.1
Structure ClusterSC_AA3_clus23
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID31870
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderGlomerellales
FamilyGlomerellaceae
GenusColletotrichum
SpeciesColletotrichum graminicola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLPLRPRRQI  FWSVNANKLV  RPAFSVLFTE  HSEHQAAMRG  FLTISTLLSG  AASAAVRFTN60
STDSHDYVIV  GGGTSGLALA  NRLSENPAVS  VLVIEAGGSV  FDNVNVTNPN  GYGLAFGTDI120
DFAFQTTNQT  YGGGQVLTMR  AAKALGGTST  INGLAYTRAE  SSQVDAWEKL  GNEGWNWNAL180
FPYYLKSEHF  QTPEPARQVA  GHLEYESKDH  GENGPLLTGW  TFGQTNGTIP  AVLNSTYKNL240
GLPWNEDVNG  GNMVGFSVFP  RTVDQENAVR  EDAARAYYYP  YQNRTNLQVL  LNTSAQKLTW300
KNATVPTADG  VEVVSADGSS  RIVKARKDVI  LSAGSLVSPL  LLEPLALATP  LSSSSTALRL360
LSTSPPLART  SRTR374

Predicted 3D structure by AlphaFold2 with pLDDT = 79.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLPLRPRRQI  FWSVNANKLV  RPAFSVLFTE  HSEHQAAMRG  FLTISTLLSG  AASAAVRFTN60
STDSHDYVIV  GGGTSGLALA  NRLSENPAVS  VLVIEAGGSV  FDNVNVTNPN  GYGLAFGTDI120
DFAFQTTNQT  YGGGQVLTMR  AAKALGGTST  INGLAYTRAE  SSQVDAWEKL  GNEGWNWNAL180
FPYYLKSEHF  QTPEPARQVA  GHLEYESKDH  GENGPLLTGW  TFGQTNGTIP  AVLNSTYKNL240
GLPWNEDVNG  GNMVGFSVFP  RTVDQENAVR  EDAARAYYYP  YQNRTNLQVL  LNTSAQKLTW300
KNATVPTADG  VEVVSADGSS  RIVKARKDVI  LSAGSLVSPL  LLEPLALATP  LSSSSTALRL360
LSTSPPLART  SRTR374

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(64-343)

MLPLRPRRQI  FWSVNANKLV  RPAFSVLFTE  HSEHQAAMRG  FLTISTLLSG  AASAAVRFTN60
STDSHDYVIV  GGGTSGLALA  NRLSENPAVS  VLVIEAGGSV  FDNVNVTNPN  GYGLAFGTDI120
DFAFQTTNQT  YGGGQVLTMR  AAKALGGTST  INGLAYTRAE  SSQVDAWEKL  GNEGWNWNAL180
FPYYLKSEHF  QTPEPARQVA  GHLEYESKDH  GENGPLLTGW  TFGQTNGTIP  AVLNSTYKNL240
GLPWNEDVNG  GNMVGFSVFP  RTVDQENAVR  EDAARAYYYP  YQNRTNLQVL  LNTSAQKLTW300
KNATVPTADG  VEVVSADGSS  RIVKARKDVI  LSAGSLVSPL  LLEPLALATP  LSSSSTALRL360
LSTSPPLART  SRTR374

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help