CAZyme3D

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Entry ID

Information for CAZyme ID: WDF57139.1

Basic Information

GenBank IDWDF57139.1
FamilyGT4
Sequence Length354
UniProt IDWDF57139.1(MOD)Download
Average pLDDT?95.64
CAZy50 ID130169
CAZy50 RepYes, WDF57139.1
Structure ClusterSC_GT4_clus864
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3025666
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusMucilaginibacter
SpeciesMucilaginibacter sp. KACC 22063

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTKPKVLHIS  TGLDRGGAEK  VILDLSTYLM  QNDFEVHVIG  LTDKDKFKDA  FEQQGITINT60
LNITKSPLSL  IEGLSTARKF  IKKHDIKLIH  AHMTHALIFA  SLLKLLLPSI  NIVFTPHSFN120
IGSSLRFAIV  RFLKPLRKAD  ILFSAKMKRS  CYKKQSYIIP  NGIDTAKYDV  SYPKNQRFTF180
VTIGRLERVK  NHSALIECAA  MLKGQFDFEI  QLVGDGILRE  DLQKAALDKG  VADILKFCGY240
QSNVAEICSR  AHVFLLPSLW  EGFPISLLEA  GASGIPVLST  PVGSIPEVIG  KEYGYLAEII300
DFPVVMHEMY  KNYQEALSKA  ELFRSVVQQK  YDLKIIGKRH  TNIYLQLIQG  HALL354

Predicted 3D structure by AlphaFold2 with pLDDT = 95.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTKPKVLHIS  TGLDRGGAEK  VILDLSTYLM  QNDFEVHVIG  LTDKDKFKDA  FEQQGITINT60
LNITKSPLSL  IEGLSTARKF  IKKHDIKLIH  AHMTHALIFA  SLLKLLLPSI  NIVFTPHSFN120
IGSSLRFAIV  RFLKPLRKAD  ILFSAKMKRS  CYKKQSYIIP  NGIDTAKYDV  SYPKNQRFTF180
VTIGRLERVK  NHSALIECAA  MLKGQFDFEI  QLVGDGILRE  DLQKAALDKG  VADILKFCGY240
QSNVAEICSR  AHVFLLPSLW  EGFPISLLEA  GASGIPVLST  PVGSIPEVIG  KEYGYLAEII300
DFPVVMHEMY  KNYQEALSKA  ELFRSVVQQK  YDLKIIGKRH  TNIYLQLIQG  HALL354

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(174-310)

MTKPKVLHIS  TGLDRGGAEK  VILDLSTYLM  QNDFEVHVIG  LTDKDKFKDA  FEQQGITINT60
LNITKSPLSL  IEGLSTARKF  IKKHDIKLIH  AHMTHALIFA  SLLKLLLPSI  NIVFTPHSFN120
IGSSLRFAIV  RFLKPLRKAD  ILFSAKMKRS  CYKKQSYIIP  NGIDTAKYDV  SYPKNQRFTF180
VTIGRLERVK  NHSALIECAA  MLKGQFDFEI  QLVGDGILRE  DLQKAALDKG  VADILKFCGY240
QSNVAEICSR  AHVFLLPSLW  EGFPISLLEA  GASGIPVLST  PVGSIPEVIG  KEYGYLAEII300
DFPVVMHEMY  KNYQEALSKA  ELFRSVVQQK  YDLKIIGKRH  TNIYLQLIQG  HALL354

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help