CAZyme3D

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Entry ID

Information for CAZyme ID: WDF48322.1

Basic Information

GenBank IDWDF48322.1
FamilyGT4
Sequence Length372
UniProt IDWDF48322.1(MOD)Download
Average pLDDT?93.26
CAZy50 ID118362
CAZy50 RepYes, WDF48322.1
Structure ClusterSC_GT4_clus864
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3025664
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusChryseobacterium
SpeciesChryseobacterium sp. KACC 21268

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRIVIDCRM  YFSSGIGRYL  QNIVLHLLQK  TKEYEVILLG  NEDSIKKQLV  ASGVLASEIN60
IINFDVPIYT  IKEQLKLPFV  IPESDIFWSP  HFNIPLLPIK  SKRRIVTIHD  AYHLAFLNQL120
TFKEKIYAKI  MYNSALRKSD  RVITVSDFSK  KELLKYSNFS  KPEKIEVIHN  GVAEISLEGN180
NFHNPEYIPY  LLSVGNLKPN  KNFINALLGF  SKFLQENRDS  NLKFIIIGKK  EGFVNGDNRI240
DDLMNKYSYL  QDKVYFTGHV  SDQELAVLYQ  NATAFIFPSI  YEGFGLPPLE  AMLYNVPVLC300
SNAASMPEIC  GDSVLYFNPI  DPDDIARSIV  QISTDDILSE  ELQKKGKERS  SQFTWELSAK360
KHFSIIDELF  SS372

Predicted 3D structure by AlphaFold2 with pLDDT = 93.26 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRRIVIDCRM  YFSSGIGRYL  QNIVLHLLQK  TKEYEVILLG  NEDSIKKQLV  ASGVLASEIN60
IINFDVPIYT  IKEQLKLPFV  IPESDIFWSP  HFNIPLLPIK  SKRRIVTIHD  AYHLAFLNQL120
TFKEKIYAKI  MYNSALRKSD  RVITVSDFSK  KELLKYSNFS  KPEKIEVIHN  GVAEISLEGN180
NFHNPEYIPY  LLSVGNLKPN  KNFINALLGF  SKFLQENRDS  NLKFIIIGKK  EGFVNGDNRI240
DDLMNKYSYL  QDKVYFTGHV  SDQELAVLYQ  NATAFIFPSI  YEGFGLPPLE  AMLYNVPVLC300
SNAASMPEIC  GDSVLYFNPI  DPDDIARSIV  QISTDDILSE  ELQKKGKERS  SQFTWELSAK360
KHFSIIDELF  SS372

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(188-343)

MRRIVIDCRM  YFSSGIGRYL  QNIVLHLLQK  TKEYEVILLG  NEDSIKKQLV  ASGVLASEIN60
IINFDVPIYT  IKEQLKLPFV  IPESDIFWSP  HFNIPLLPIK  SKRRIVTIHD  AYHLAFLNQL120
TFKEKIYAKI  MYNSALRKSD  RVITVSDFSK  KELLKYSNFS  KPEKIEVIHN  GVAEISLEGN180
NFHNPEYIPY  LLSVGNLKPN  KNFINALLGF  SKFLQENRDS  NLKFIIIGKK  EGFVNGDNRI240
DDLMNKYSYL  QDKVYFTGHV  SDQELAVLYQ  NATAFIFPSI  YEGFGLPPLE  AMLYNVPVLC300
SNAASMPEIC  GDSVLYFNPI  DPDDIARSIV  QISTDDILSE  ELQKKGKERS  SQFTWELSAK360
KHFSIIDELF  SS372

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help