Basic information |
Taxonomy |
Protein Sequence |
Structure visualization |
Binding Residues |
dbCAN domains |
Homology within Cluster
Information for CAZyme ID: WDE98163.1
Basic Information
| GenBank ID | WDE98163.1 |
| Family | CBM35 |
| Sequence Length | 1269 |
| UniProt ID | WDE98163.1(MOD) |
| Average pLDDT? | 88.85 |
| CAZy50 ID | 6620 |
| CAZy50 Rep | Yes, WDE98163.1 |
| Structure Cluster | SC_CBM35_clus21 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1658616 |
| Kingdom | Bacteria |
| Phylum | Lentisphaerota |
| Class | Lentisphaeria |
| Order | Lentisphaerales |
| Family | Lentisphaeraceae |
| Genus | Lentisphaera |
| Species | Lentisphaera profundi |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKIPKIQHWL ACSFLLLVFS SFAYTDTKAK TTDAVIYEAE DATMHKLRHE SNHEGFSGTG | 60 |
| FIGGFYNNSN GLLTFKIKAK KAGKQDITLR YSAGFGDAQV VLGINGKNQE ITMSTTKSWK | 120 |
| VWDHISLPIS LKKGENTITL KMKDVTNKCI NLDYLALGKL SKNKAVPTPI IVSNSEPTLR | 180 |
| DAFFKPGGWE DIANVKAKDK KLLVTQEGTG LLINGRKGKT NNISTKKHYQ DIEFHLEFML | 240 |
| AKNSNAGVYF MGRYEIQIFD SYGKDKWAFS DLGGLYQRWP PQRGAGVPAK VNAAKAPGEW | 300 |
| QTMDVIFRAP RFDETGRRTA QAYFKEVKIN GQIVQENLYA VGPTRSSQFN DEATKGPIMI | 360 |
| QGDHGPVAIR NMKIKEIDLS DIKTKELSTD EKRPLAKNGD AMVEMVEMGK GIFQNKGCIE | 420 |
| CHNTTTNDQI VKTGPAIYGV FQKKPRSIKV KESAEDHLVD LPADKSYLYQ SLREPTAHLS | 480 |
| LNKKDGDKAF LPIMPAFTPE ILKDSEIEAL YHYLITLNPE NLAGPSIHWQ NKPSDQYNIW | 540 |
| KDRGSVIVQE RPRVQRTIIP GTSARSYFVG LPGNVNYSFD PRTFGISMIW NGPFVSINGM | 600 |
| MNGRGKPSSL GDKAIRWNKG NTDFFTPYLE SGKLLDRSFT EPALADYHYV YKTLHFEGDY | 660 |
| LEEASEIDSE FLGLSTIKNE IPKFSYDIEG NRLDLSFEVR RDNSIHANFD LKLKRSLSLH | 720 |
| IPSSNFSDFK TSLGKIEGDK WVLPAGTHKN VTFSAKRKAK FQNIHTAGIK SVTKENLNGQ | 780 |
| KLAWTKAQDS EQVKAGMSKS YTLHNFPAPK GINGRKQLFE PLGIEFLNKD IAFVTTRTAG | 840 |
| VWKVIGDKWF LFSEGHYDSL NLVIESENSI VIGEKPGLTR LRDTDGDNWA DKRENVSDQF | 900 |
| RFCGNYHEYL HGPIAYKGGY LYNLNLTHNL PFNYKAGGAY MGTGGGLKGW MCYVDKDGNF | 960 |
| STFANGFRSP AGLALSPKKE IIYTENQGEY VGTSKIFKVE KGKFYGNPTG LVDLPGLTFK | 1020 |
| SPEIQWDAVK DKRELAMILL PHNKVMNAPG NPVWDKTKGA FGPFEGQMFL GDQTQSCIYR | 1080 |
| IARETVNDID QGVALPFANK LASGVMRLTF NPKDNSLWVG QTGRGWRSQG GAESSLQKIT | 1140 |
| FSGETPDAIQ TIKVTPKGFD IHFTKPQKNQ NFGSIDVSSW FYVDSPNYGS AEKGTRNESI | 1200 |
| NLVTWSADQK TCSIQFKEFV LESKEGTTNT SRIYFLDLKN TKFGKSQGAF LSKAYYTLNA | 1260 |
| IPKNKLNTT | 1269 |
Predicted 3D structure by AlphaFold2 with pLDDT = 88.85 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKIPKIQHWL ACSFLLLVFS SFAYTDTKAK TTDAVIYEAE DATMHKLRHE SNHEGFSGTG | 60 |
| FIGGFYNNSN GLLTFKIKAK KAGKQDITLR YSAGFGDAQV VLGINGKNQE ITMSTTKSWK | 120 |
| VWDHISLPIS LKKGENTITL KMKDVTNKCI NLDYLALGKL SKNKAVPTPI IVSNSEPTLR | 180 |
| DAFFKPGGWE DIANVKAKDK KLLVTQEGTG LLINGRKGKT NNISTKKHYQ DIEFHLEFML | 240 |
| AKNSNAGVYF MGRYEIQIFD SYGKDKWAFS DLGGLYQRWP PQRGAGVPAK VNAAKAPGEW | 300 |
| QTMDVIFRAP RFDETGRRTA QAYFKEVKIN GQIVQENLYA VGPTRSSQFN DEATKGPIMI | 360 |
| QGDHGPVAIR NMKIKEIDLS DIKTKELSTD EKRPLAKNGD AMVEMVEMGK GIFQNKGCIE | 420 |
| CHNTTTNDQI VKTGPAIYGV FQKKPRSIKV KESAEDHLVD LPADKSYLYQ SLREPTAHLS | 480 |
| LNKKDGDKAF LPIMPAFTPE ILKDSEIEAL YHYLITLNPE NLAGPSIHWQ NKPSDQYNIW | 540 |
| KDRGSVIVQE RPRVQRTIIP GTSARSYFVG LPGNVNYSFD PRTFGISMIW NGPFVSINGM | 600 |
| MNGRGKPSSL GDKAIRWNKG NTDFFTPYLE SGKLLDRSFT EPALADYHYV YKTLHFEGDY | 660 |
| LEEASEIDSE FLGLSTIKNE IPKFSYDIEG NRLDLSFEVR RDNSIHANFD LKLKRSLSLH | 720 |
| IPSSNFSDFK TSLGKIEGDK WVLPAGTHKN VTFSAKRKAK FQNIHTAGIK SVTKENLNGQ | 780 |
| KLAWTKAQDS EQVKAGMSKS YTLHNFPAPK GINGRKQLFE PLGIEFLNKD IAFVTTRTAG | 840 |
| VWKVIGDKWF LFSEGHYDSL NLVIESENSI VIGEKPGLTR LRDTDGDNWA DKRENVSDQF | 900 |
| RFCGNYHEYL HGPIAYKGGY LYNLNLTHNL PFNYKAGGAY MGTGGGLKGW MCYVDKDGNF | 960 |
| STFANGFRSP AGLALSPKKE IIYTENQGEY VGTSKIFKVE KGKFYGNPTG LVDLPGLTFK | 1020 |
| SPEIQWDAVK DKRELAMILL PHNKVMNAPG NPVWDKTKGA FGPFEGQMFL GDQTQSCIYR | 1080 |
| IARETVNDID QGVALPFANK LASGVMRLTF NPKDNSLWVG QTGRGWRSQG GAESSLQKIT | 1140 |
| FSGETPDAIQ TIKVTPKGFD IHFTKPQKNQ NFGSIDVSSW FYVDSPNYGS AEKGTRNESI | 1200 |
| NLVTWSADQK TCSIQFKEFV LESKEGTTNT SRIYFLDLKN TKFGKSQGAF LSKAYYTLNA | 1260 |
| IPKNKLNTT | 1269 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.