Information for CAZyme ID: WCT14409.1
Basic Information
GenBank ID | WCT14409.1 |
Family | GH25 |
Sequence Length | 605 |
UniProt ID | WCT14409.1(MOD)![]() |
Average pLDDT? | 71.68 |
CAZy50 ID | 51786 |
CAZy50 Rep | Yes, WCT14409.1 |
Structure Cluster | SC_GH25_clus76 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1176721 |
Kingdom | Bacteria |
Phylum | Bacteroidota |
Class | Sphingobacteriia |
Order | Sphingobacteriales |
Family | Sphingobacteriaceae |
Genus | Mucilaginibacter |
Species | Mucilaginibacter jinjuensis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MMKFLSFSMP YSGLTWFVGL LAACLVAGAI YSWYMRSKKH LLALSPNDTT AQLKQIKIIC | 60 |
NAQYQCLSSY LKTFQKVKNN RINSLRDKLE LPYLLLQPQQ CLRGAGLSTY INSVSPKIVR | 120 |
SVISVRDELY VAHYNLVTLL KTYPDVTEAY EQEYSENIIG LSKMHDELSG MMHGKTFDKT | 180 |
NGADWYTGYF SIFGAWFQKG ANNDIEVTHT EIVQHIISLN KLYRFVPFVI HTTENALRCD | 240 |
FAFKNIADAN QNFRSRIEAL ALAHRKAVKI ASLLMQYPVP QPSKSIFKAW KPRLKPERET | 300 |
MLRPKDSNST VKSLKPAGWA AKPNRRWVYW LSGFLILSAA LFIIAFFDFE TPIPNTPAMP | 360 |
ATKHSVLKTA AQMIKAEILS DTADFKMLFK KDTQAVAHVY GIDVSRYQGN LIEDFDRMDT | 420 |
IHFAICKATE GRSYTDPDFQ KNWEFCSKRN LVRGAYHFYH ADEDPVVQAG HFINTVKAWR | 480 |
KTDIPPVVDV EEDGVKGVSN LKVFDRNLLV FLDYIQKKTN RTPVIYSDLS FANTYYVNDT | 540 |
LARYPLWLAE YSSKKSPKIP KLWRKNGYVI WQKKDNYSID SEKADFDVFN GDGKDLIKFI | 600 |
KRSNR | 605 |
Predicted 3D structure by AlphaFold2 with pLDDT = 71.68 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MMKFLSFSMP YSGLTWFVGL LAACLVAGAI YSWYMRSKKH LLALSPNDTT AQLKQIKIIC | 60 |
NAQYQCLSSY LKTFQKVKNN RINSLRDKLE LPYLLLQPQQ CLRGAGLSTY INSVSPKIVR | 120 |
SVISVRDELY VAHYNLVTLL KTYPDVTEAY EQEYSENIIG LSKMHDELSG MMHGKTFDKT | 180 |
NGADWYTGYF SIFGAWFQKG ANNDIEVTHT EIVQHIISLN KLYRFVPFVI HTTENALRCD | 240 |
FAFKNIADAN QNFRSRIEAL ALAHRKAVKI ASLLMQYPVP QPSKSIFKAW KPRLKPERET | 300 |
MLRPKDSNST VKSLKPAGWA AKPNRRWVYW LSGFLILSAA LFIIAFFDFE TPIPNTPAMP | 360 |
ATKHSVLKTA AQMIKAEILS DTADFKMLFK KDTQAVAHVY GIDVSRYQGN LIEDFDRMDT | 420 |
IHFAICKATE GRSYTDPDFQ KNWEFCSKRN LVRGAYHFYH ADEDPVVQAG HFINTVKAWR | 480 |
KTDIPPVVDV EEDGVKGVSN LKVFDRNLLV FLDYIQKKTN RTPVIYSDLS FANTYYVNDT | 540 |
LARYPLWLAE YSSKKSPKIP KLWRKNGYVI WQKKDNYSID SEKADFDVFN GDGKDLIKFI | 600 |
KRSNR | 605 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.