CAZyme3D

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Entry ID

Information for CAZyme ID: WCT14409.1

Basic Information

GenBank IDWCT14409.1
FamilyGH25
Sequence Length605
UniProt IDWCT14409.1(MOD)Download
Average pLDDT?71.68
CAZy50 ID51786
CAZy50 RepYes, WCT14409.1
Structure ClusterSC_GH25_clus76
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1176721
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusMucilaginibacter
SpeciesMucilaginibacter jinjuensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMKFLSFSMP  YSGLTWFVGL  LAACLVAGAI  YSWYMRSKKH  LLALSPNDTT  AQLKQIKIIC60
NAQYQCLSSY  LKTFQKVKNN  RINSLRDKLE  LPYLLLQPQQ  CLRGAGLSTY  INSVSPKIVR120
SVISVRDELY  VAHYNLVTLL  KTYPDVTEAY  EQEYSENIIG  LSKMHDELSG  MMHGKTFDKT180
NGADWYTGYF  SIFGAWFQKG  ANNDIEVTHT  EIVQHIISLN  KLYRFVPFVI  HTTENALRCD240
FAFKNIADAN  QNFRSRIEAL  ALAHRKAVKI  ASLLMQYPVP  QPSKSIFKAW  KPRLKPERET300
MLRPKDSNST  VKSLKPAGWA  AKPNRRWVYW  LSGFLILSAA  LFIIAFFDFE  TPIPNTPAMP360
ATKHSVLKTA  AQMIKAEILS  DTADFKMLFK  KDTQAVAHVY  GIDVSRYQGN  LIEDFDRMDT420
IHFAICKATE  GRSYTDPDFQ  KNWEFCSKRN  LVRGAYHFYH  ADEDPVVQAG  HFINTVKAWR480
KTDIPPVVDV  EEDGVKGVSN  LKVFDRNLLV  FLDYIQKKTN  RTPVIYSDLS  FANTYYVNDT540
LARYPLWLAE  YSSKKSPKIP  KLWRKNGYVI  WQKKDNYSID  SEKADFDVFN  GDGKDLIKFI600
KRSNR605

Predicted 3D structure by AlphaFold2 with pLDDT = 71.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MMKFLSFSMP  YSGLTWFVGL  LAACLVAGAI  YSWYMRSKKH  LLALSPNDTT  AQLKQIKIIC60
NAQYQCLSSY  LKTFQKVKNN  RINSLRDKLE  LPYLLLQPQQ  CLRGAGLSTY  INSVSPKIVR120
SVISVRDELY  VAHYNLVTLL  KTYPDVTEAY  EQEYSENIIG  LSKMHDELSG  MMHGKTFDKT180
NGADWYTGYF  SIFGAWFQKG  ANNDIEVTHT  EIVQHIISLN  KLYRFVPFVI  HTTENALRCD240
FAFKNIADAN  QNFRSRIEAL  ALAHRKAVKI  ASLLMQYPVP  QPSKSIFKAW  KPRLKPERET300
MLRPKDSNST  VKSLKPAGWA  AKPNRRWVYW  LSGFLILSAA  LFIIAFFDFE  TPIPNTPAMP360
ATKHSVLKTA  AQMIKAEILS  DTADFKMLFK  KDTQAVAHVY  GIDVSRYQGN  LIEDFDRMDT420
IHFAICKATE  GRSYTDPDFQ  KNWEFCSKRN  LVRGAYHFYH  ADEDPVVQAG  HFINTVKAWR480
KTDIPPVVDV  EEDGVKGVSN  LKVFDRNLLV  FLDYIQKKTN  RTPVIYSDLS  FANTYYVNDT540
LARYPLWLAE  YSSKKSPKIP  KLWRKNGYVI  WQKKDNYSID  SEKADFDVFN  GDGKDLIKFI600
KRSNR605

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH25(402-579)

MMKFLSFSMP  YSGLTWFVGL  LAACLVAGAI  YSWYMRSKKH  LLALSPNDTT  AQLKQIKIIC60
NAQYQCLSSY  LKTFQKVKNN  RINSLRDKLE  LPYLLLQPQQ  CLRGAGLSTY  INSVSPKIVR120
SVISVRDELY  VAHYNLVTLL  KTYPDVTEAY  EQEYSENIIG  LSKMHDELSG  MMHGKTFDKT180
NGADWYTGYF  SIFGAWFQKG  ANNDIEVTHT  EIVQHIISLN  KLYRFVPFVI  HTTENALRCD240
FAFKNIADAN  QNFRSRIEAL  ALAHRKAVKI  ASLLMQYPVP  QPSKSIFKAW  KPRLKPERET300
MLRPKDSNST  VKSLKPAGWA  AKPNRRWVYW  LSGFLILSAA  LFIIAFFDFE  TPIPNTPAMP360
ATKHSVLKTA  AQMIKAEILS  DTADFKMLFK  KDTQAVAHVY  GIDVSRYQGN  LIEDFDRMDT420
IHFAICKATE  GRSYTDPDFQ  KNWEFCSKRN  LVRGAYHFYH  ADEDPVVQAG  HFINTVKAWR480
KTDIPPVVDV  EEDGVKGVSN  LKVFDRNLLV  FLDYIQKKTN  RTPVIYSDLS  FANTYYVNDT540
LARYPLWLAE  YSSKKSPKIP  KLWRKNGYVI  WQKKDNYSID  SEKADFDVFN  GDGKDLIKFI600
KRSNR605

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help