CAZyme3D

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Entry ID

Information for CAZyme ID: WCT12208.1

Basic Information

GenBank IDWCT12208.1
FamilyGT2
Sequence Length377
UniProt IDWCT12208.1(MOD)Download
Average pLDDT?93.15
CAZy50 ID114562
CAZy50 RepYes, WCT12208.1
Structure ClusterSC_GT2_clus384
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1176721
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusMucilaginibacter
SpeciesMucilaginibacter jinjuensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIAFYTFISF  LLTGLYLLVL  AYLIKGWSAL  KRPQLSDPSP  FKTKVTVLIA  ARNEEDNIAE60
TIDDLLAQDY  PHELTEIIIV  DDHSTDNTAH  IILSYANRGV  KLLQLKEDQA  LNSYKKKAIT120
EAIARSTGDL  LVATDADCRM  GSKWLSTVVG  YYETYNLVMI  SSPVTYFHEK  TFFERLQTLE180
FSFLIGIGAA  FIGNGRASTC  NGANLAYRKD  VFYEVGGFKG  IDNLASGDDE  LLLQKVAKVY240
PGRIGFLKDI  EAVVYTYAKP  DLSAFIQQRR  RWASKSTHYK  DKKIVALAVG  IWLFNLSLLF300
NVVGGIFYSG  FYKILGLELL  LKILFEGIFL  MLVTSFFNRK  SLVKWLLLLS  PIHIFYVVYV360
GLIGNSRTYA  WKGRMVR377

Predicted 3D structure by AlphaFold2 with pLDDT = 93.15 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIAFYTFISF  LLTGLYLLVL  AYLIKGWSAL  KRPQLSDPSP  FKTKVTVLIA  ARNEEDNIAE60
TIDDLLAQDY  PHELTEIIIV  DDHSTDNTAH  IILSYANRGV  KLLQLKEDQA  LNSYKKKAIT120
EAIARSTGDL  LVATDADCRM  GSKWLSTVVG  YYETYNLVMI  SSPVTYFHEK  TFFERLQTLE180
FSFLIGIGAA  FIGNGRASTC  NGANLAYRKD  VFYEVGGFKG  IDNLASGDDE  LLLQKVAKVY240
PGRIGFLKDI  EAVVYTYAKP  DLSAFIQQRR  RWASKSTHYK  DKKIVALAVG  IWLFNLSLLF300
NVVGGIFYSG  FYKILGLELL  LKILFEGIFL  MLVTSFFNRK  SLVKWLLLLS  PIHIFYVVYV360
GLIGNSRTYA  WKGRMVR377

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(46-215)+GT2(134-345)

MIAFYTFISF  LLTGLYLLVL  AYLIKGWSAL  KRPQLSDPSP  FKTKVTVLIA  ARNEEDNIAE60
TIDDLLAQDY  PHELTEIIIV  DDHSTDNTAH  IILSYANRGV  KLLQLKEDQA  LNSYKKKAIT120
EAIARSTGDL  LVATDADCRM  GSKWLSTVVG  YYETYNLVMI  SSPVTYFHEK  TFFERLQTLE180
FSFLIGIGAA  FIGNGRASTC  NGANLAYRKD  VFYEVGGFKG  IDNLASGDDE  LLLQKVAKVY240
PGRIGFLKDI  EAVVYTYAKP  DLSAFIQQRR  RWASKSTHYK  DKKIVALAVG  IWLFNLSLLF300
NVVGGIFYSG  FYKILGLELL  LKILFEGIFL  MLVTSFFNRK  SLVKWLLLLS  PIHIFYVVYV360
GLIGNSRTYA  WKGRMVR377

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help