CAZyme3D

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Entry ID

Information for CAZyme ID: WCT11873.1

Basic Information

GenBank IDWCT11873.1
FamilyGT2
Sequence Length293
UniProt IDWCT11873.1(MOD)Download
Average pLDDT?96.50
CAZy50 ID158922
CAZy50 RepYes, WCT11873.1
Structure ClusterSC_GT2_clus605
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1176721
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusMucilaginibacter
SpeciesMucilaginibacter jinjuensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPIKFSIIIP  TYNRAALLKV  TLQSLLAQRY  PHFEILVIDD  GGNDNTKATV  EAFADERLSY60
HWKTNAERGA  ARNYGAALAK  GSYLNFFDSD  DLAYDNHLET  AADYITANPQ  VIAFHSSYDW120
KSPEQEVIRP  SGIYEGELNN  RVFKNNILSC  NNVFVRKAEF  DALKFSEDRA  LSGTEDWMLW180
LSICCRYPLM  GVKTITSAII  QHDTRSMTTA  TGDSTLKRTQ  AFQTNLNKDA  CIVNKPAVYH240
SAMAEMYYLS  ALYYAIEGKK  RKCMEFAFKA  LKIKPGVIYT  KRTLGIIKHL  LIK293

Predicted 3D structure by AlphaFold2 with pLDDT = 96.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPIKFSIIIP  TYNRAALLKV  TLQSLLAQRY  PHFEILVIDD  GGNDNTKATV  EAFADERLSY60
HWKTNAERGA  ARNYGAALAK  GSYLNFFDSD  DLAYDNHLET  AADYITANPQ  VIAFHSSYDW120
KSPEQEVIRP  SGIYEGELNN  RVFKNNILSC  NNVFVRKAEF  DALKFSEDRA  LSGTEDWMLW180
LSICCRYPLM  GVKTITSAII  QHDTRSMTTA  TGDSTLKRTQ  AFQTNLNKDA  CIVNKPAVYH240
SAMAEMYYLS  ALYYAIEGKK  RKCMEFAFKA  LKIKPGVIYT  KRTLGIIKHL  LIK293

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(6-148)

MPIKFSIIIP  TYNRAALLKV  TLQSLLAQRY  PHFEILVIDD  GGNDNTKATV  EAFADERLSY60
HWKTNAERGA  ARNYGAALAK  GSYLNFFDSD  DLAYDNHLET  AADYITANPQ  VIAFHSSYDW120
KSPEQEVIRP  SGIYEGELNN  RVFKNNILSC  NNVFVRKAEF  DALKFSEDRA  LSGTEDWMLW180
LSICCRYPLM  GVKTITSAII  QHDTRSMTTA  TGDSTLKRTQ  AFQTNLNKDA  CIVNKPAVYH240
SAMAEMYYLS  ALYYAIEGKK  RKCMEFAFKA  LKIKPGVIYT  KRTLGIIKHL  LIK293

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help