CAZyme3D

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Entry ID

Information for CAZyme ID: WCL82211.1

Basic Information

GenBank IDWCL82211.1
FamilyGT4
Sequence Length367
UniProt IDH6L3D5(92.9,99.5)Download
Average pLDDT?92.00
CAZy50 ID121976
CAZy50 RepYes, WCL82211.1
Structure ClusterSC_GT4_clus390
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3023936
KingdomBacteria
PhylumBacteroidota
ClassSaprospiria
OrderSaprospirales
FamilySaprospiraceae
GenusSaprospira
SpeciesSaprospira sp. CCB-QB6

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRILFVALH  RPNRSPSQRF  RYEQYLDFLQ  ENGYEYELCY  LIEAEDDPVF  YGAGQYLGKM60
KVLLKSVWRL  WRASSAWAKR  FDLIYVQREA  FMLGTSFFER  RFAKRAPLVF  DFDDSIWLQN120
VSANNKALGF  LKNANKTAEL  IALADMVFAG  NRYLADYAKQ  YNECVKVLPT  TVDEERHHPK180
FKPAKAADAP  VCIGWTGSFS  TVQYFEQLLP  VLRRLKEKYG  DKIYFKLIGD  ANYRLPELDI240
QGVAWTEADE  IEQLVELDIG  LMPLPTDEWT  KGKCGLKGLQ  YMALGLPAVM  SAVGVNTEII300
KSGVNGFLAA  NEEEWFEQLS  ALIESSGLRE  KLGKAGRQSV  LEEYAVVAQK  ERYLAFFDEL360
VAKKKQK367

Predicted 3D structure by AlphaFold2 with pLDDT = 92.00 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKRILFVALH  RPNRSPSQRF  RYEQYLDFLQ  ENGYEYELCY  LIEAEDDPVF  YGAGQYLGKM60
KVLLKSVWRL  WRASSAWAKR  FDLIYVQREA  FMLGTSFFER  RFAKRAPLVF  DFDDSIWLQN120
VSANNKALGF  LKNANKTAEL  IALADMVFAG  NRYLADYAKQ  YNECVKVLPT  TVDEERHHPK180
FKPAKAADAP  VCIGWTGSFS  TVQYFEQLLP  VLRRLKEKYG  DKIYFKLIGD  ANYRLPELDI240
QGVAWTEADE  IEQLVELDIG  LMPLPTDEWT  KGKCGLKGLQ  YMALGLPAVM  SAVGVNTEII300
KSGVNGFLAA  NEEEWFEQLS  ALIESSGLRE  KLGKAGRQSV  LEEYAVVAQK  ERYLAFFDEL360
VAKKKQK367

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(275-333)

MKRILFVALH  RPNRSPSQRF  RYEQYLDFLE  EHGYAYELSY  LIEAEDDPVF  YGAGQYLGKM60
KVLLKSIWRL  WRASGAWAKQ  FDVIYVQREA  FMLGTSFFER  RFAKRAPLVF  DFDDSIWLQN120
VSTNNKALGF  LKNANKTAEL  IALADMVFAG  NRYLADYARQ  YNDCVKVLPT  TVDEQRHHPK180
FKPAKAADAA  VCIGWTGSFS  TVQYFEQLLP  VLRRLKEKYG  DKIYFKLIGD  ANYSLPELDI240
RGVAWTEADE  IEQLVELDIG  LMPLPTDEWT  KGKCGLKGLQ  YMALGLPAVM  SAVGVNTEII300
EQGVNGYLAH  NEEEWFAQLS  ALIESPELRA  ELGRAGRQRV  LEEYAVVAQK  ERYLAFFDEL360
VAKKK365

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help