CAZyme3D

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Entry ID

Information for CAZyme ID: WCJ59152.1

Basic Information

GenBank IDWCJ59152.1
FamilyGT5
Sequence Length481
UniProt IDWCJ59152.1(MOD)Download
Average pLDDT?96.05
CAZy50 ID73097
CAZy50 RepYes, WCJ59152.1
Structure ClusterSC_GT5_clus57
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2974023
KingdomBacteria
PhylumVerrucomicrobiota
ClassVerrucomicrobiae
OrderLimisphaerales
FamilyFontisphaeraceae
GenusFontisphaera
SpeciesFontisphaera persica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRILLASSEI  HPYSKTGGLA  DMVGALGKAL  ARQGHQVGLV  TPLYRGVREK  FPDIQRLDWW60
LDVPWGEGRQ  GGQVFHRQAE  KNLTVYFIDR  PDFFDRNGLY  TEHGHGYPDN  PERYLFFSKA120
VVHLANYLPW  RPQALHLHDW  QTALAAPLVH  WQRQQGAPVN  LPRTLFTIHN  LAYQGICDAR180
FYALTNLPPA  YWWPDGCEFF  GAFNFLKGGI  EYADLLTTVS  PRYAREITTE  AFGCQLDGVL240
RRRAAQLTGI  LNGVDYEEWN  TEHNPYLRHP  YSWRNLAGKA  ANKRELQREM  GLPEREHVPL300
YGNISRLVDQ  KGTDLLLGAL  EEMLATEIQF  VFLGSGEPVL  EAACRRLAAR  YPAQVAVRIG360
FDQPLSHRIE  AGCDFYLMPS  RFEPCGLNQM  YSLRYGTVPI  VRRTGGLDDS  VVDYLDDPRR420
ANGIKFQEYS  SRALARAMRK  SLALYHEPAL  LRRYRINGMK  ADFSWDRTAR  EYSALYQKMA480
G481

Predicted 3D structure by AlphaFold2 with pLDDT = 96.05 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRILLASSEI  HPYSKTGGLA  DMVGALGKAL  ARQGHQVGLV  TPLYRGVREK  FPDIQRLDWW60
LDVPWGEGRQ  GGQVFHRQAE  KNLTVYFIDR  PDFFDRNGLY  TEHGHGYPDN  PERYLFFSKA120
VVHLANYLPW  RPQALHLHDW  QTALAAPLVH  WQRQQGAPVN  LPRTLFTIHN  LAYQGICDAR180
FYALTNLPPA  YWWPDGCEFF  GAFNFLKGGI  EYADLLTTVS  PRYAREITTE  AFGCQLDGVL240
RRRAAQLTGI  LNGVDYEEWN  TEHNPYLRHP  YSWRNLAGKA  ANKRELQREM  GLPEREHVPL300
YGNISRLVDQ  KGTDLLLGAL  EEMLATEIQF  VFLGSGEPVL  EAACRRLAAR  YPAQVAVRIG360
FDQPLSHRIE  AGCDFYLMPS  RFEPCGLNQM  YSLRYGTVPI  VRRTGGLDDS  VVDYLDDPRR420
ANGIKFQEYS  SRALARAMRK  SLALYHEPAL  LRRYRINGMK  ADFSWDRTAR  EYSALYQKMA480
G481

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT5(2-478)

MRILLASSEI  HPYSKTGGLA  DMVGALGKAL  ARQGHQVGLV  TPLYRGVREK  FPDIQRLDWW60
LDVPWGEGRQ  GGQVFHRQAE  KNLTVYFIDR  PDFFDRNGLY  TEHGHGYPDN  PERYLFFSKA120
VVHLANYLPW  RPQALHLHDW  QTALAAPLVH  WQRQQGAPVN  LPRTLFTIHN  LAYQGICDAR180
FYALTNLPPA  YWWPDGCEFF  GAFNFLKGGI  EYADLLTTVS  PRYAREITTE  AFGCQLDGVL240
RRRAAQLTGI  LNGVDYEEWN  TEHNPYLRHP  YSWRNLAGKA  ANKRELQREM  GLPEREHVPL300
YGNISRLVDQ  KGTDLLLGAL  EEMLATEIQF  VFLGSGEPVL  EAACRRLAAR  YPAQVAVRIG360
FDQPLSHRIE  AGCDFYLMPS  RFEPCGLNQM  YSLRYGTVPI  VRRTGGLDDS  VVDYLDDPRR420
ANGIKFQEYS  SRALARAMRK  SLALYHEPAL  LRRYRINGMK  ADFSWDRTAR  EYSALYQKMA480
G481

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help