CAZyme3D

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Entry ID

Information for CAZyme ID: WCJ58972.1

Basic Information

GenBank IDWCJ58972.1
FamilyGH140
Sequence Length567
UniProt IDWCJ58972.1(MOD)Download
Average pLDDT?93.77
CAZy50 ID57061
CAZy50 RepYes, WCJ58972.1
Structure ClusterSC_GH140_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2974023
KingdomBacteria
PhylumVerrucomicrobiota
ClassVerrucomicrobiae
OrderLimisphaerales
FamilyFontisphaeraceae
GenusFontisphaera
SpeciesFontisphaera persica
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/WCJ58972.1.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKPHSMWARS  IFATWRCAGC  LWWLSGVLGL  LCAAPRPPLV  PQWDQHELVL  TSTKNYTNPV60
QEAALTAIFV  SPQGERLRVP  GFWDGGRTWR  VRFMPRTPGP  WTWQTECTDA  ANRGLHGVAG120
RFICSAARSA  GGSRFAQHGP  IRVSPDGRYL  VHDDMTPFFW  LADTAWNGPL  RATDAEWEYY180
VQTRARQKFT  AVQWVTTQWR  AAPDGNREGE  LAYTGRERIA  VNPAFFQKLD  RRVEVMHRAG240
LLSVPVLLWA  IQGGSNPQIN  PGVSLPEDQA  ILLARYMVAR  WQARAVVWIL  NGDGDYRGEK300
AARWQRIGRG  VFGDIAHAPV  TCHPGGRMWV  RQEFIQEPWY  DLVGYQSGHN  DRDDNLRWIT360
SGPAAREWRL  PPFKPFISLE  APYENHVGGA  AGPMGAEVVR  RAHYWSLLNA  PTAGITYGGH420
GIWGWDDGTR  PPVDHPNTGV  PLPWREALMM  PGAQQMTVLA  DFFQSLDFWR  LRPAPEVLAS480
QPGLAQPRRF  IAAARSERND  FMVIYVPEDR  VVELQLAALT  SMKGSPVLTW  VNPRNGERRA540
AVAVLGPTTC  QVPTPEPGDW  LLLVTTQ567

Predicted 3D structure by AlphaFold2 with pLDDT = 93.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKPHSMWARS  IFATWRCAGC  LWWLSGVLGL  LCAAPRPPLV  PQWDQHELVL  TSTKNYTNPV60
QEAALTAIFV  SPQGERLRVP  GFWDGGRTWR  VRFMPRTPGP  WTWQTECTDA  ANRGLHGVAG120
RFICSAARSA  GGSRFAQHGP  IRVSPDGRYL  VHDDMTPFFW  LADTAWNGPL  RATDAEWEYY180
VQTRARQKFT  AVQWVTTQWR  AAPDGNREGE  LAYTGRERIA  VNPAFFQKLD  RRVEVMHRAG240
LLSVPVLLWA  IQGGSNPQIN  PGVSLPEDQA  ILLARYMVAR  WQARAVVWIL  NGDGDYRGEK300
AARWQRIGRG  VFGDIAHAPV  TCHPGGRMWV  RQEFIQEPWY  DLVGYQSGHN  DRDDNLRWIT360
SGPAAREWRL  PPFKPFISLE  APYENHVGGA  AGPMGAEVVR  RAHYWSLLNA  PTAGITYGGH420
GIWGWDDGTR  PPVDHPNTGV  PLPWREALMM  PGAQQMTVLA  DFFQSLDFWR  LRPAPEVLAS480
QPGLAQPRRF  IAAARSERND  FMVIYVPEDR  VVELQLAALT  SMKGSPVLTW  VNPRNGERRA540
AVAVLGPTTC  QVPTPEPGDW  LLLVTTQ567

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH140(139-561)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help