CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: WBV52021.1

Basic Information

GenBank IDWBV52021.1
FamilyGH17
Sequence Length793
UniProt IDA0A3C1RID2(97.1,99.2)Download
Average pLDDT?88.45
CAZy50 ID28131
CAZy50 RepYes, WBV52021.1
Structure ClusterSC_GH17_clus104
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID373672
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusChryseobacterium
SpeciesChryseobacterium gambrini

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MADQIKKSAN  KVPIGQKVAF  GLGMLANQMF  PAMIGIFTVV  LVEKLGFSGF  LLGLTYFIPK60
FYDALFDLIM  GYVSDNTKSK  WGRRRQYVLA  GAIILGISFA  LMWQLYAENG  VTYNFWYFLV120
VSLIFYSGLT  IFSIPYVAMG  YEMSDDFHER  TNIMATSQLI  GQLAWVVAPW  FWVIMADQSL180
FPSSDVAVRT  LAVYVAIGCA  ILAAIPAFFI  PSKSTLHENY  SPIDLKGILG  SFGEIKEGLK240
ASVEIKPFRK  ICIATFLIFN  AFQTTAGFSY  FIIKYYLFKG  NEEGFGLWPT  LFGSVGAIIT300
TVAVIPIVAR  MSKVMGKKKA  FLVSQGISIV  GYILLYLLFV  PGKPYLFLFA  LPFFSFGIGS360
LFTLMMSMTS  DVIDIDELNT  GKRREGSLGA  IYWWMVKFGT  AVAGLLSGMI  LSLVAFQSNA420
ATQTDETMFW  LRIFFVGIPI  LGTLTAIWTM  KNYDVDEAKA  REVRDLLEKR  KAPKPSGYGA480
NNVLEGMNLA  GLSRLQLQQQ  FPQYYFPTYD  YSNVERVKSE  FLNVFNGGMS  CICFSVFTEK540
QFPGDFITEE  QIRKRLEVLK  PHTQWIRVFS  STHGHENIPK  IAKEMGFKVL  MGAWIGKDEA600
ENQQEIQSLI  QLIKEGNVDI  AAVGNEVLFR  GDQNEETLLG  YIGQVKNQTL  NVPITYIDVY660
YEIINHPKLV  VASDTILINC  YPFWEGASID  HAGMYLQEMY  HQTQKIAGGK  EIIIAETGWP720
SKGEAVQNAE  PSPENLMRYY  IEAQKWASKE  QINLFYFSSF  DESWKIHYEG  WAGTSWGLWG780
ANEKFKFKKK  IQD793

Predicted 3D structure by AlphaFold2 with pLDDT = 88.45 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MADQIKKSAN  KVPIGQKVAF  GLGMLANQMF  PAMIGIFTVV  LVEKLGFSGF  LLGLTYFIPK60
FYDALFDLIM  GYVSDNTKSK  WGRRRQYVLA  GAIILGISFA  LMWQLYAENG  VTYNFWYFLV120
VSLIFYSGLT  IFSIPYVAMG  YEMSDDFHER  TNIMATSQLI  GQLAWVVAPW  FWVIMADQSL180
FPSSDVAVRT  LAVYVAIGCA  ILAAIPAFFI  PSKSTLHENY  SPIDLKGILG  SFGEIKEGLK240
ASVEIKPFRK  ICIATFLIFN  AFQTTAGFSY  FIIKYYLFKG  NEEGFGLWPT  LFGSVGAIIT300
TVAVIPIVAR  MSKVMGKKKA  FLVSQGISIV  GYILLYLLFV  PGKPYLFLFA  LPFFSFGIGS360
LFTLMMSMTS  DVIDIDELNT  GKRREGSLGA  IYWWMVKFGT  AVAGLLSGMI  LSLVAFQSNA420
ATQTDETMFW  LRIFFVGIPI  LGTLTAIWTM  KNYDVDEAKA  REVRDLLEKR  KAPKPSGYGA480
NNVLEGMNLA  GLSRLQLQQQ  FPQYYFPTYD  YSNVERVKSE  FLNVFNGGMS  CICFSVFTEK540
QFPGDFITEE  QIRKRLEVLK  PHTQWIRVFS  STHGHENIPK  IAKEMGFKVL  MGAWIGKDEA600
ENQQEIQSLI  QLIKEGNVDI  AAVGNEVLFR  GDQNEETLLG  YIGQVKNQTL  NVPITYIDVY660
YEIINHPKLV  VASDTILINC  YPFWEGASID  HAGMYLQEMY  HQTQKIAGGK  EIIIAETGWP720
SKGEAVQNAE  PSPENLMRYY  IEAQKWASKE  QINLFYFSSF  DESWKIHYEG  WAGTSWGLWG780
ANEKFKFKKK  IQD793

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH17(560-788)

MADQIKKSAN  KVPIGQKVAF  GLGMLANQMF  PAMIGIFTVV  LVEKLGFSGF  LLGLTYFIPK60
FYDALFDLIM  GYVSDNTKSK  WGRRRQYVLA  GAIILGISFA  LMWQLYAENG  VTYNFWYFLV120
VSLIFYSGLT  IFSIPYVAMG  YEMSDDFHER  TNIMATSQLI  GQLAWVVAPW  FWVIMADQSL180
FPSSDVAVRT  LAVYVAIGCA  ILAAIPAFFI  PSKSTLHENY  SPIDLKGILG  SFGEIKEGLK240
ASVEIKPFRK  ICIATFLIFN  AFQTTAGFSY  FIIKYYLFKG  NEEGFGLWPT  LFGSVGAIIT300
TVAVIPIVAR  MSKVMGKKKA  FLVSQGISIV  GYILLYLLFV  PGKPYLFLFA  LPFFSFGIGS360
LFTLMMSMTS  DVIDIDELNT  GKRREGSLGA  IYWWMVKFGT  AVAGLLSGMI  LSLVAFQSNA420
ATQTDETMFW  LRIFFVGIPI  LGTLTAIWTM  KNYDVDEAKA  REVRDLLEKR  KAPKPSGYGA480
NNVLEGMNLA  GLSRAQLQQK  FPQYYFPTVD  YTHIESIKTE  FSTVFKAGMS  GICFSVFTEK540
QFPGDFITEE  QIRKRLEVLK  PHTQWIRVFS  STHGHENIPK  IAKEMGFKIL  MGAWIGKDET600
ENQQEIQSLI  QLIKEGNVDI  AAVGNEVLFR  GDQNEETLLG  YIQQVKNQTL  NVPVTYIDVY660
YEIINHPKLV  SASDKILINC  YPFWEGASID  HAGMYLQEMY  HQTQKIAGGK  EIIIAETGWP720
SKGEAVQYAE  PSPENLMRYY  IEAQKWASKE  QINLFYFSSF  DESWKIHYEG  WAGTSWGLWD780
ANENFKF787

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help