Basic information |
Taxonomy |
Protein Sequence |
Structure visualization |
Binding Residues |
dbCAN domains |
Homology within Cluster
Information for CAZyme ID: WBV42584.1
Basic Information
| GenBank ID | WBV42584.1 |
| Family | GT2 |
| Sequence Length | 1597 |
| UniProt ID | WBV42584.1(MOD) |
| Average pLDDT? | 82.13 |
| CAZy50 ID | 3218 |
| CAZy50 Rep | Yes, WBV42584.1 |
| Structure Cluster | SC_GT2_clus1032 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 204525 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodospirillales |
| Family | Acetobacteraceae |
| Genus | Pseudoroseomonas |
| Species | Pseudoroseomonas cervicalis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MPPMRRLLPA GPLLWGLLTL AGATLGLTFM VAPLEAEQQA WLALAGFLLF LIVGRSRSRP | 60 |
| ALFFLVALST LISLRYIYWR VTETLDYSGF FATFLGTGLV LAELYAVIAL LLSYFQQLWP | 120 |
| LERKPVPLPA DPAEWPVVDV FIPTYNEPLE VVKPSVFAAL SMDWPRDKLR VHILDDGRRE | 180 |
| DFRQFAGEAG CGYIIRPDNK GAKAGNINHA MTKTDGEYIV IFDCDHVATR AFLQLTIGWM | 240 |
| LRDRGIGMLQ TPHHFYSPDP FERNLASGTR VPNEGLLFYG LVQQGNDLWN ATFFCGSCAV | 300 |
| LRRTALEQVG GVPTETVTED CHCSLKMQRL GWRTAYLRVP LAAGLATDRL ISHIGQRMRW | 360 |
| ARGMIQIFRV ENPLLGPGLK LYQRLCYLNA QWHFLFPLPR VVFLTAPLAF LLFGQSIIAA | 420 |
| SPLAIVAYAG PHIVHSIGTN SRLQGRVRHS FWSEIYETVL ALYLLPVVLA TLFDPKKGKF | 480 |
| NVTDKGGTLQ EGYFDLRAVA ANFVLAIFLV LGLLSGIYGM AANSPASQEF QANLLNAIWV | 540 |
| VLSLITVMAG LAVGRERRQV RERHRVSARL PSIAILPDGR RVEGQSVDLS LGGALLTMPR | 600 |
| PERFGEAAAP ALAGAEPGPA APEANRLLLE FDLGPDRVRI PAEVLRWEGE RMQARFLPQR | 660 |
| MLDEGNIVRA VLGRADAWMD WDRVRQDRPM RALLEVAVSI TGLFRGDSQL SFRARRRRRE | 720 |
| QARSAAARRL PGQGPASGAA PGQAVGGNPG GTARRAAALL LALGGGLALA APAAAQRLQA | 780 |
| PPPPPALAQP PMAAPAGPLP GAAMTVQAIP AQAPSAAPPP LFSAPQGGAP SPQPFAAPPG | 840 |
| APPGLPDLTQ PQGGAAGAGQ GGFQGAPFAA PAPGNGAPLA SGSAARVESR TLKQLGLAGP | 900 |
| MQLRGTSDLQ GVLFGVRSDE VVTSARLVLQ GATSPALIPE LSQIAIALNE QFVGTITPER | 960 |
| TRPSFGPIEF PINPVFFADT NRLNFRFTGR YAVECNDPLS GLLWSTVSDL STLHLTLEKL | 1020 |
| PLARDLARLP EPFFDPRLRN EPLTLPVVMA EAAGNDLVRA AAIATSWFAV QADYRGATFP | 1080 |
| VSASVPTRGN AMVLVAGNDS VPGVTLPRFE GPTLAVVPNP ADPTASLLVV GGRTGAEAAI | 1140 |
| AAQALAVGRQ ALSGELALVT APEMPARAEY DAPRWVRTDR PVRFGELVDP SELQSYGFAP | 1200 |
| GAIAIPFRTA PDLYTWRERS LPVDIRFRAP PGPVTDVAVS RLDASLNNIY LRSFPLREVE | 1260 |
| PSWPWSWVAR NTGLGAAPER GEGTLGLPPY LVFGQNELQL RFDMRPLNRG DCVSIPGDIR | 1320 |
| ASIDPDSTID LSRGYRFTEL PNLAHFAGSG YPYTRLADFS TSALVMPDRA NTLELSAAFT | 1380 |
| LLGRLAASVG HPATRIAVVR PAGLAEVADR ELLVIGALGR QPALAQLLGE RSPLRIEGNR | 1440 |
| VSVALPGALE NFRNLFLTDD RMLDRQRLEA VLAGPGEATG MLIGFESPLK GGRSVVALTG | 1500 |
| TTPQGMDAMV AALRDPEMLP RIQGDLALLA GGRLTAYKIG TNYTVGFLPP HLWPQYWLGR | 1560 |
| RPDLLLALAM VAAVCLAVPA YWLLRRRAAL RLRTRTQ | 1597 |
Predicted 3D structure by AlphaFold2 with pLDDT = 82.13 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MPPMRRLLPA GPLLWGLLTL AGATLGLTFM VAPLEAEQQA WLALAGFLLF LIVGRSRSRP | 60 |
| ALFFLVALST LISLRYIYWR VTETLDYSGF FATFLGTGLV LAELYAVIAL LLSYFQQLWP | 120 |
| LERKPVPLPA DPAEWPVVDV FIPTYNEPLE VVKPSVFAAL SMDWPRDKLR VHILDDGRRE | 180 |
| DFRQFAGEAG CGYIIRPDNK GAKAGNINHA MTKTDGEYIV IFDCDHVATR AFLQLTIGWM | 240 |
| LRDRGIGMLQ TPHHFYSPDP FERNLASGTR VPNEGLLFYG LVQQGNDLWN ATFFCGSCAV | 300 |
| LRRTALEQVG GVPTETVTED CHCSLKMQRL GWRTAYLRVP LAAGLATDRL ISHIGQRMRW | 360 |
| ARGMIQIFRV ENPLLGPGLK LYQRLCYLNA QWHFLFPLPR VVFLTAPLAF LLFGQSIIAA | 420 |
| SPLAIVAYAG PHIVHSIGTN SRLQGRVRHS FWSEIYETVL ALYLLPVVLA TLFDPKKGKF | 480 |
| NVTDKGGTLQ EGYFDLRAVA ANFVLAIFLV LGLLSGIYGM AANSPASQEF QANLLNAIWV | 540 |
| VLSLITVMAG LAVGRERRQV RERHRVSARL PSIAILPDGR RVEGQSVDLS LGGALLTMPR | 600 |
| PERFGEAAAP ALAGAEPGPA APEANRLLLE FDLGPDRVRI PAEVLRWEGE RMQARFLPQR | 660 |
| MLDEGNIVRA VLGRADAWMD WDRVRQDRPM RALLEVAVSI TGLFRGDSQL SFRARRRRRE | 720 |
| QARSAAARRL PGQGPASGAA PGQAVGGNPG GTARRAAALL LALGGGLALA APAAAQRLQA | 780 |
| PPPPPALAQP PMAAPAGPLP GAAMTVQAIP AQAPSAAPPP LFSAPQGGAP SPQPFAAPPG | 840 |
| APPGLPDLTQ PQGGAAGAGQ GGFQGAPFAA PAPGNGAPLA SGSAARVESR TLKQLGLAGP | 900 |
| MQLRGTSDLQ GVLFGVRSDE VVTSARLVLQ GATSPALIPE LSQIAIALNE QFVGTITPER | 960 |
| TRPSFGPIEF PINPVFFADT NRLNFRFTGR YAVECNDPLS GLLWSTVSDL STLHLTLEKL | 1020 |
| PLARDLARLP EPFFDPRLRN EPLTLPVVMA EAAGNDLVRA AAIATSWFAV QADYRGATFP | 1080 |
| VSASVPTRGN AMVLVAGNDS VPGVTLPRFE GPTLAVVPNP ADPTASLLVV GGRTGAEAAI | 1140 |
| AAQALAVGRQ ALSGELALVT APEMPARAEY DAPRWVRTDR PVRFGELVDP SELQSYGFAP | 1200 |
| GAIAIPFRTA PDLYTWRERS LPVDIRFRAP PGPVTDVAVS RLDASLNNIY LRSFPLREVE | 1260 |
| PSWPWSWVAR NTGLGAAPER GEGTLGLPPY LVFGQNELQL RFDMRPLNRG DCVSIPGDIR | 1320 |
| ASIDPDSTID LSRGYRFTEL PNLAHFAGSG YPYTRLADFS TSALVMPDRA NTLELSAAFT | 1380 |
| LLGRLAASVG HPATRIAVVR PAGLAEVADR ELLVIGALGR QPALAQLLGE RSPLRIEGNR | 1440 |
| VSVALPGALE NFRNLFLTDD RMLDRQRLEA VLAGPGEATG MLIGFESPLK GGRSVVALTG | 1500 |
| TTPQGMDAMV AALRDPEMLP RIQGDLALLA GGRLTAYKIG TNYTVGFLPP HLWPQYWLGR | 1560 |
| RPDLLLALAM VAAVCLAVPA YWLLRRRAAL RLRTRTQ | 1597 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.