Information for CAZyme ID: WAK03227.1
Basic Information
| GenBank ID | WAK03227.1 |
| Family | GT28 |
| Sequence Length | 412 |
| UniProt ID | A0A9E8YNQ5(100,100) |
| Average pLDDT? | 86.60 |
| CAZy50 ID | 93011 |
| CAZy50 Rep | Yes, WAK03227.1 |
| Structure Cluster | SC_GT28_clus36 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2911520 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Methylococcales |
| Family | Methylococcaceae |
| Genus | Methylobacter |
| Species | Methylobacter sp. YRD-M1 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKKRVLIMSA GAGTGHIKAA EALEKSFAAD DRVVEIISND ALQYTNKLFR DFYSSFYTSL | 60 |
| VRSAPNFLGW WYKTSDEPWY TDRMRHMIDR LNTKPLVRFI REFNPHITVC THYMPAGIIS | 120 |
| HLIATNQLEA HLSIVVTDFD FHAMWLSRSF HRYFVAIDET RAYLEMLGIP SERITVSGIP | 180 |
| IDPVFQLPIN REEERLRLGL NPEKPVLLLS AGALGVGPTE FMVERMLNLN SDAQTVVVCG | 240 |
| RNDELKQRIQ QLIDSRSSRF KVLGYSGEMH KLMKMADIFI GKPGGMTTSE AIACGLPMCV | 300 |
| VSPIPGQEER NSDHLLEEGI AVKCNDLTTL PFKLERLLDD PDRLSRMKAN ALRFAQPAAS | 360 |
| TTIVDTLLED RLPPLSLTKN QRAAITLAAG ADSQRRSYTA GLASYYNFKF RN | 412 |
Predicted 3D structure by AlphaFold2 with pLDDT = 86.60 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKKRVLIMSA GAGTGHIKAA EALEKSFAAD DRVVEIISND ALQYTNKLFR DFYSSFYTSL | 60 |
| VRSAPNFLGW WYKTSDEPWY TDRMRHMIDR LNTKPLVRFI REFNPHITVC THYMPAGIIS | 120 |
| HLIATNQLEA HLSIVVTDFD FHAMWLSRSF HRYFVAIDET RAYLEMLGIP SERITVSGIP | 180 |
| IDPVFQLPIN REEERLRLGL NPEKPVLLLS AGALGVGPTE FMVERMLNLN SDAQTVVVCG | 240 |
| RNDELKQRIQ QLIDSRSSRF KVLGYSGEMH KLMKMADIFI GKPGGMTTSE AIACGLPMCV | 300 |
| VSPIPGQEER NSDHLLEEGI AVKCNDLTTL PFKLERLLDD PDRLSRMKAN ALRFAQPAAS | 360 |
| TTIVDTLLED RLPPLSLTKN QRAAITLAAG ADSQRRSYTA GLASYYNFKF RN | 412 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.