CAZyme3D

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Entry ID

Information for CAZyme ID: WAJ72117.1

Basic Information

GenBank IDWAJ72117.1
FamilyPL6_3
Sequence Length771
UniProt IDA0A9E9BTP3(100,100)Download
Average pLDDT?88.98
CAZy50 ID30456
CAZy50 RepYes, WAJ72117.1
Structure ClusterSC_PL6_clus18
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2984846
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusCatenovulum
SpeciesCatenovulum sp. TS8

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNKKLIAISV  AALLTTGCDG  VYDNFGPADS  RGTIEINGQS  EVGQALMVTV  ADDDGLSNAV60
TYTWMADSTV  IEGATESTYT  VTAAEVGTAI  SVRAEYVDDS  GNDESLIIKA  PAIVPEMTAD120
GVVMISGIPD  DGVIAFGSEL  TANVSDTDGI  DSTINYQWWA  DDNEISGATA  QSYTTTMADV180
GKQISVQTTY  TDNLGLVEMP  VSDKTNAIVD  PTAFSLTMSQ  TDDITVGTEL  VATFGGVDAT240
AAFQWYADDT  EISGATAQIY  TVTAEDLEKT  LSVTVTYNSG  NKTLTQQAND  VVYSTVVTSG300
AELVTAVANA  AENDVIALAS  GEYVDVGYDA  NYAGDLTTYG  VLVSTNGVKL  TRTKNSDAVI360
KGRTCIALKG  DNTMVDGLVF  EENNALVPDA  GSNETACESS  SSTDAMLLLN  GDGVIVRNSI420
FKDHVGGTGF  DWIELRGTNS  IVERNLFSGS  DSANDKSGPI  SIYINTDVDQ  DQGNVVQYNH480
FTNITPSSSA  NSGAYAIQVG  RSTGDDSKGV  GQHTIQYNLF  DGVEVKERLI  KVQGGENTIK540
GNTIINSVGM  ISLEDGVFNT  VSDNIIIPGE  GVKSGGIALS  ALGHTVTNNY  IAEDAYTGGD600
RGGIFIHDDM  LDNSGNEAAI  ATYTGAELAV  TISNNTLVNV  AQAVGFDDRD  ASCVGFPPYL660
NTSSNLIAST  ADTSLSKMVG  TESADFSGLG  CSLNSNSTKT  DNHVFVSDIT  DGGTVDISTM720
VGNAGEAGLT  TNAQGLYNGS  GAQANIGADA  SQLYVISADD  VGPGSSWTAN  E771

Predicted 3D structure by AlphaFold2 with pLDDT = 88.98 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNKKLIAISV  AALLTTGCDG  VYDNFGPADS  RGTIEINGQS  EVGQALMVTV  ADDDGLSNAV60
TYTWMADSTV  IEGATESTYT  VTAAEVGTAI  SVRAEYVDDS  GNDESLIIKA  PAIVPEMTAD120
GVVMISGIPD  DGVIAFGSEL  TANVSDTDGI  DSTINYQWWA  DDNEISGATA  QSYTTTMADV180
GKQISVQTTY  TDNLGLVEMP  VSDKTNAIVD  PTAFSLTMSQ  TDDITVGTEL  VATFGGVDAT240
AAFQWYADDT  EISGATAQIY  TVTAEDLEKT  LSVTVTYNSG  NKTLTQQAND  VVYSTVVTSG300
AELVTAVANA  AENDVIALAS  GEYVDVGYDA  NYAGDLTTYG  VLVSTNGVKL  TRTKNSDAVI360
KGRTCIALKG  DNTMVDGLVF  EENNALVPDA  GSNETACESS  SSTDAMLLLN  GDGVIVRNSI420
FKDHVGGTGF  DWIELRGTNS  IVERNLFSGS  DSANDKSGPI  SIYINTDVDQ  DQGNVVQYNH480
FTNITPSSSA  NSGAYAIQVG  RSTGDDSKGV  GQHTIQYNLF  DGVEVKERLI  KVQGGENTIK540
GNTIINSVGM  ISLEDGVFNT  VSDNIIIPGE  GVKSGGIALS  ALGHTVTNNY  IAEDAYTGGD600
RGGIFIHDDM  LDNSGNEAAI  ATYTGAELAV  TISNNTLVNV  AQAVGFDDRD  ASCVGFPPYL660
NTSSNLIAST  ADTSLSKMVG  TESADFSGLG  CSLNSNSTKT  DNHVFVSDIT  DGGTVDISTM720
VGNAGEAGLT  TNAQGLYNGS  GAQANIGADA  SQLYVISADD  VGPGSSWTAN  E771

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL6_3(296-670)

MNKKLIAISV  AALLTTGCDG  VYDNFGPADS  RGTIEINGQS  EVGQALMVTV  ADDDGLSNAV60
TYTWMADSTV  IEGATESTYT  VTAAEVGTAI  SVRAEYVDDS  GNDESLIIKA  PAIVPEMTAD120
GVVMISGIPD  DGVIAFGSEL  TANVSDTDGI  DSTINYQWWA  DDNEISGATA  QSYTTTMADV180
GKQISVQTTY  TDNLGLVEMP  VSDKTNAIVD  PTAFSLTMSQ  TDDITVGTEL  VATFGGVDAT240
AAFQWYADDT  EISGATAQIY  TVTAEDLEKT  LSVTVTYNSG  NKTLTQQAND  VVYSTVVTSG300
AELVTAVANA  AENDVIALAS  GEYVDVGYDA  NYAGDLTTYG  VLVSTNGVKL  TRTKNSDAVI360
KGRTCIALKG  DNTMVDGLVF  EENNALVPDA  GSNETACESS  SSTDAMLLLN  GDGVIVRNSI420
FKDHVGGTGF  DWIELRGTNS  IVERNLFSGS  DSANDKSGPI  SIYINTDVDQ  DQGNVVQYNH480
FTNITPSSSA  NSGAYAIQVG  RSTGDDSKGV  GQHTIQYNLF  DGVEVKERLI  KVQGGENTIK540
GNTIINSVGM  ISLEDGVFNT  VSDNIIIPGE  GVKSGGIALS  ALGHTVTNNY  IAEDAYTGGD600
RGGIFIHDDM  LDNSGNEAAI  ATYTGAELAV  TISNNTLVNV  AQAVGFDDRD  ASCVGFPPYL660
NTSSNLIAST  ADTSLSKMVG  TESADFSGLG  CSLNSNSTKT  DNHVFVSDIT  DGGTVDISTM720
VGNAGEAGLT  TNAQGLYNGS  GAQANIGADA  SQLYVISADD  VGPGSSWTAN  E771

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help