Information for CAZyme ID: VWO96843.1
Basic Information
GenBank ID | VWO96843.1 |
Family | AA3_2 |
Sequence Length | 582 |
UniProt ID | A0A5K1JWT0(100,100)![]() |
Average pLDDT? | 86.69 |
CAZy50 ID | 54896 |
CAZy50 Rep | Yes, VWO96843.1 |
Structure Cluster | SC_AA3_clus94 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 34458 |
Kingdom | Eukaryota |
Phylum | Basidiomycota |
Class | Agaricomycetes |
Order | Polyporales |
Family | Polyporaceae |
Genus | Ganoderma |
Species | Ganoderma boninense |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MNNSFLATLD QVSGKAFDYL IIGGGTAGLV LAARLSEDPT KSVLVLEAGG AHLGDPMIGK | 60 |
LNYGKFFKNE EYDWAFMTVP QKHAENTSFF WPRYVFETTF FLIPLGKGLG GSSATNFYLW | 120 |
NRPEEEDINA WERLGNPGWN WKNFLKYSIK CEKLIPASEE ASAAERLTYD EKLHGTDGPV | 180 |
VLGWPNMRPG WDVALQDTLE ALGIPRIVEP AYLEQAGTCS NLKVLVNAPV LRILSAPGEG | 240 |
FTASGVEFMF DGVKHTVSTA ASGEVILSAG AIKSPQVLEL SGIGDTKILD TLGIETKVDL | 300 |
PAVGMNAQDH LFAGVAYELK EPEKYNTLDP LFDPAVAEEH LKLYVEGNGL FTLGIVGISM | 360 |
APLKSISDNA DEIESAAPTG GDAPGLAEQR SEQVARFKEG AANAEFVTIP SFYSFPNPPA | 420 |
PGAKHVSVCT TLNRPFSRGT IHAASLDPLA PPEIDPHYFE EDIDRLTYIE QVKFVRKLAQ | 480 |
TEPFASLLGR EVNPGPDVQS DADISLWLKK YLTTVHHTSS TCSMLPRDKG GVVDPELRVY | 540 |
GTKGLRVVDL SVVPLIPSAH TQSIVYAVAE QAADIIKGTF EM | 582 |
Predicted 3D structure by AlphaFold2 with pLDDT = 86.69 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MNNSFLATLD QVSGKAFDYL IIGGGTAGLV LAARLSEDPT KSVLVLEAGG AHLGDPMIGK | 60 |
LNYGKFFKNE EYDWAFMTVP QKHAENTSFF WPRYVFETTF FLIPLGKGLG GSSATNFYLW | 120 |
NRPEEEDINA WERLGNPGWN WKNFLKYSIK CEKLIPASEE ASAAERLTYD EKLHGTDGPV | 180 |
VLGWPNMRPG WDVALQDTLE ALGIPRIVEP AYLEQAGTCS NLKVLVNAPV LRILSAPGEG | 240 |
FTASGVEFMF DGVKHTVSTA ASGEVILSAG AIKSPQVLEL SGIGDTKILD TLGIETKVDL | 300 |
PAVGMNAQDH LFAGVAYELK EPEKYNTLDP LFDPAVAEEH LKLYVEGNGL FTLGIVGISM | 360 |
APLKSISDNA DEIESAAPTG GDAPGLAEQR SEQVARFKEG AANAEFVTIP SFYSFPNPPA | 420 |
PGAKHVSVCT TLNRPFSRGT IHAASLDPLA PPEIDPHYFE EDIDRLTYIE QVKFVRKLAQ | 480 |
TEPFASLLGR EVNPGPDVQS DADISLWLKK YLTTVHHTSS TCSMLPRDKG GVVDPELRVY | 540 |
GTKGLRVVDL SVVPLIPSAH TQSIVYAVAE QAADIIKGTF EM | 582 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.