CAZyme3D

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Entry ID

Information for CAZyme ID: VWO96843.1

Basic Information

GenBank IDVWO96843.1
FamilyAA3_2
Sequence Length582
UniProt IDA0A5K1JWT0(100,100)Download
Average pLDDT?86.69
CAZy50 ID54896
CAZy50 RepYes, VWO96843.1
Structure ClusterSC_AA3_clus94
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID34458
KingdomEukaryota
PhylumBasidiomycota
ClassAgaricomycetes
OrderPolyporales
FamilyPolyporaceae
GenusGanoderma
SpeciesGanoderma boninense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNNSFLATLD  QVSGKAFDYL  IIGGGTAGLV  LAARLSEDPT  KSVLVLEAGG  AHLGDPMIGK60
LNYGKFFKNE  EYDWAFMTVP  QKHAENTSFF  WPRYVFETTF  FLIPLGKGLG  GSSATNFYLW120
NRPEEEDINA  WERLGNPGWN  WKNFLKYSIK  CEKLIPASEE  ASAAERLTYD  EKLHGTDGPV180
VLGWPNMRPG  WDVALQDTLE  ALGIPRIVEP  AYLEQAGTCS  NLKVLVNAPV  LRILSAPGEG240
FTASGVEFMF  DGVKHTVSTA  ASGEVILSAG  AIKSPQVLEL  SGIGDTKILD  TLGIETKVDL300
PAVGMNAQDH  LFAGVAYELK  EPEKYNTLDP  LFDPAVAEEH  LKLYVEGNGL  FTLGIVGISM360
APLKSISDNA  DEIESAAPTG  GDAPGLAEQR  SEQVARFKEG  AANAEFVTIP  SFYSFPNPPA420
PGAKHVSVCT  TLNRPFSRGT  IHAASLDPLA  PPEIDPHYFE  EDIDRLTYIE  QVKFVRKLAQ480
TEPFASLLGR  EVNPGPDVQS  DADISLWLKK  YLTTVHHTSS  TCSMLPRDKG  GVVDPELRVY540
GTKGLRVVDL  SVVPLIPSAH  TQSIVYAVAE  QAADIIKGTF  EM582

Predicted 3D structure by AlphaFold2 with pLDDT = 86.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNNSFLATLD  QVSGKAFDYL  IIGGGTAGLV  LAARLSEDPT  KSVLVLEAGG  AHLGDPMIGK60
LNYGKFFKNE  EYDWAFMTVP  QKHAENTSFF  WPRYVFETTF  FLIPLGKGLG  GSSATNFYLW120
NRPEEEDINA  WERLGNPGWN  WKNFLKYSIK  CEKLIPASEE  ASAAERLTYD  EKLHGTDGPV180
VLGWPNMRPG  WDVALQDTLE  ALGIPRIVEP  AYLEQAGTCS  NLKVLVNAPV  LRILSAPGEG240
FTASGVEFMF  DGVKHTVSTA  ASGEVILSAG  AIKSPQVLEL  SGIGDTKILD  TLGIETKVDL300
PAVGMNAQDH  LFAGVAYELK  EPEKYNTLDP  LFDPAVAEEH  LKLYVEGNGL  FTLGIVGISM360
APLKSISDNA  DEIESAAPTG  GDAPGLAEQR  SEQVARFKEG  AANAEFVTIP  SFYSFPNPPA420
PGAKHVSVCT  TLNRPFSRGT  IHAASLDPLA  PPEIDPHYFE  EDIDRLTYIE  QVKFVRKLAQ480
TEPFASLLGR  EVNPGPDVQS  DADISLWLKK  YLTTVHHTSS  TCSMLPRDKG  GVVDPELRVY540
GTKGLRVVDL  SVVPLIPSAH  TQSIVYAVAE  QAADIIKGTF  EM582

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(211-577)

MNNSFLATLD  QVSGKAFDYL  IIGGGTAGLV  LAARLSEDPT  KSVLVLEAGG  AHLGDPMIGK60
LNYGKFFKNE  EYDWAFMTVP  QKHAENTSFF  WPRYVFETTF  FLIPLGKGLG  GSSATNFYLW120
NRPEEEDINA  WERLGNPGWN  WKNFLKYSIK  CEKLIPASEE  ASAAERLTYD  EKLHGTDGPV180
VLGWPNMRPG  WDVALQDTLE  ALGIPRIVEP  AYLEQAGTCS  NLKVLVNAPV  LRILSAPGEG240
FTASGVEFMF  DGVKHTVSTA  ASGEVILSAG  AIKSPQVLEL  SGIGDTKILD  TLGIETKVDL300
PAVGMNAQDH  LFAGVAYELK  EPEKYNTLDP  LFDPAVAEEH  LKLYVEGNGL  FTLGIVGISM360
APLKSISDNA  DEIESAAPTG  GDAPGLAEQR  SEQVARFKEG  AANAEFVTIP  SFYSFPNPPA420
PGAKHVSVCT  TLNRPFSRGT  IHAASLDPLA  PPEIDPHYFE  EDIDRLTYIE  QVKFVRKLAQ480
TEPFASLLGR  EVNPGPDVQS  DADISLWLKK  YLTTVHHTSS  TCSMLPRDKG  GVVDPELRVY540
GTKGLRVVDL  SVVPLIPSAH  TQSIVYAVAE  QAADIIKGTF  EM582

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help