CAZyme3D

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Entry ID

Information for CAZyme ID: VWO94917.1

Basic Information

GenBank IDVWO94917.1
FamilyAA3_2
Sequence Length486
UniProt IDA0A5K1JTE5(100,100)Download
Average pLDDT?89.62
CAZy50 ID71901
CAZy50 RepYes, VWO94917.1
Structure ClusterSC_AA3_clus57
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID34458
KingdomEukaryota
PhylumBasidiomycota
ClassAgaricomycetes
OrderPolyporales
FamilyPolyporaceae
GenusGanoderma
SpeciesGanoderma boninense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTTLSSAEAS  LQLILFCCQK  QGLQCFLGTA  GCVLAARLSE  DPNTTVLLIE  AGQNFQGVTA60
TQIPFEFSDT  FRSDLDWNTH  TIPQTHLNGR  DTYWPRGKVL  GGTSSTNALI  YDRCPPSDFD120
EWVALGAEGW  SYQDLKPYFF  KAEKFHPSFK  HLRVNPANHG  SFGPNRTGFP  PETAPINDYV180
IEACRELGLR  NIDDINAGQG  SIGVTKLMGT  IDRNGRRSSS  ATAYLTDKIL  SRSNLIVATE240
ITIRRLVFSD  VVTSPGAPPR  VVGVEMATSR  NAQSYCCGAN  KEVILSAGTV  GTPQVLLLSG300
VGPSEDLDNL  GIPVVKDMPA  VGRHVVDHVS  SGPIPFRTKP  SLTFDFLRDA  GARAIAFLKW360
QFCGTGPLAS  LVYSSTAFVR  STDPRLPFYA  NGRSGAPVND  RSSGPDAPDL  ELLWVPQAVF420
ADGSHRNRQN  TAGVTFAAVA  LKPESRGHIT  LKSNDPFEMP  NIDPRYLSTE  SDMNVLVRGV480
RLIWKL486

Predicted 3D structure by AlphaFold2 with pLDDT = 89.62 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTTLSSAEAS  LQLILFCCQK  QGLQCFLGTA  GCVLAARLSE  DPNTTVLLIE  AGQNFQGVTA60
TQIPFEFSDT  FRSDLDWNTH  TIPQTHLNGR  DTYWPRGKVL  GGTSSTNALI  YDRCPPSDFD120
EWVALGAEGW  SYQDLKPYFF  KAEKFHPSFK  HLRVNPANHG  SFGPNRTGFP  PETAPINDYV180
IEACRELGLR  NIDDINAGQG  SIGVTKLMGT  IDRNGRRSSS  ATAYLTDKIL  SRSNLIVATE240
ITIRRLVFSD  VVTSPGAPPR  VVGVEMATSR  NAQSYCCGAN  KEVILSAGTV  GTPQVLLLSG300
VGPSEDLDNL  GIPVVKDMPA  VGRHVVDHVS  SGPIPFRTKP  SLTFDFLRDA  GARAIAFLKW360
QFCGTGPLAS  LVYSSTAFVR  STDPRLPFYA  NGRSGAPVND  RSSGPDAPDL  ELLWVPQAVF420
ADGSHRNRQN  TAGVTFAAVA  LKPESRGHIT  LKSNDPFEMP  NIDPRYLSTE  SDMNVLVRGV480
RLIWKL486

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(28-485)

MTTLSSAEAS  LQLILFCCQK  QGLQCFLGTA  GCVLAARLSE  DPNTTVLLIE  AGQNFQGVTA60
TQIPFEFSDT  FRSDLDWNTH  TIPQTHLNGR  DTYWPRGKVL  GGTSSTNALI  YDRCPPSDFD120
EWVALGAEGW  SYQDLKPYFF  KAEKFHPSFK  HLRVNPANHG  SFGPNRTGFP  PETAPINDYV180
IEACRELGLR  NIDDINAGQG  SIGVTKLMGT  IDRNGRRSSS  ATAYLTDKIL  SRSNLIVATE240
ITIRRLVFSD  VVTSPGAPPR  VVGVEMATSR  NAQSYCCGAN  KEVILSAGTV  GTPQVLLLSG300
VGPSEDLDNL  GIPVVKDMPA  VGRHVVDHVS  SGPIPFRTKP  SLTFDFLRDA  GARAIAFLKW360
QFCGTGPLAS  LVYSSTAFVR  STDPRLPFYA  NGRSGAPVND  RSSGPDAPDL  ELLWVPQAVF420
ADGSHRNRQN  TAGVTFAAVA  LKPESRGHIT  LKSNDPFEMP  NIDPRYLSTE  SDMNVLVRGV480
RLIWKL486

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help