Information for CAZyme ID: VIP03225.1
Basic Information
| GenBank ID | VIP03225.1 |
| Family | GT4 |
| Sequence Length | 677 |
| UniProt ID | A0A6C2YQD6(100,100) |
| Average pLDDT? | 89.14 |
| CAZy50 ID | 41495 |
| CAZy50 Rep | Yes, VIP03225.1 |
| Structure Cluster | SC_GT4_clus287 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 692036 |
| Kingdom | Bacteria |
| Phylum | Planctomycetota |
| Class | Planctomycetia |
| Order | Gemmatales |
| Family | Gemmataceae |
| Genus | Tuwongella |
| Species | Tuwongella immobilis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MPSLTPTMQS LKRMFSAPRS ILRRARDWWR GETASSYFSI RNPRVLNPLL QECGVAPLEL | 60 |
| SGADLESDDR QAVRFILALL SSRPWFARQF PKALSAGTTG EFGKWLFEVA TEKYDLSPVA | 120 |
| IARLRAVWDA DPARRVKRVY ELRSDLRAAF PLGLLPCGRR EYLQWLLVHG PSNLGLEPEE | 180 |
| CLWMMFELEE DLPGALAATY LHQPEWQTKF PHALTIFGWQ TFQRWLQAEY QLNSRWSKCL | 240 |
| EFPARYRSWD ELQLLLAAQP ELKASFPAAQ ANLGDVNAVL AWLRRQPVPQ PNSAWQHQLR | 300 |
| AEFEQGIPQQ LAVNLIGHFR YLSGLQEAAH ALGRALERAN VRCGRRDIPV LFETNWADRE | 360 |
| RYQEIETHEI SIATVAVNSF LNEQIPFSGM RLRSDVHRIA VWYWELEEVP HVWQHADDAV | 420 |
| SEIWAPTRFI ADAFRARFRR PVVTMLPGVE LPKVPHIDRS EWGFHKDECV FLFVFDMASM | 480 |
| MVRKNPIGLI EAFGRAFPKQ SGAKLVIKVN RSHRYPQERQ QLLEAASKVG ATVLEGLWPR | 540 |
| ERVLGLMQAA DAFVSLHRSE GLGLTMAEAM LLGKPVIASG YSGNLDFMTS DNSLLVDTKR | 600 |
| VLIQEDVGPY PKGIGWGDPC LDHAAHWMRW IRENPQAARD LGARAKLDLE SQLSLQAFGQ | 660 |
| RMLARLQQIQ AERRSRN | 677 |
Predicted 3D structure by AlphaFold2 with pLDDT = 89.14 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MPSLTPTMQS LKRMFSAPRS ILRRARDWWR GETASSYFSI RNPRVLNPLL QECGVAPLEL | 60 |
| SGADLESDDR QAVRFILALL SSRPWFARQF PKALSAGTTG EFGKWLFEVA TEKYDLSPVA | 120 |
| IARLRAVWDA DPARRVKRVY ELRSDLRAAF PLGLLPCGRR EYLQWLLVHG PSNLGLEPEE | 180 |
| CLWMMFELEE DLPGALAATY LHQPEWQTKF PHALTIFGWQ TFQRWLQAEY QLNSRWSKCL | 240 |
| EFPARYRSWD ELQLLLAAQP ELKASFPAAQ ANLGDVNAVL AWLRRQPVPQ PNSAWQHQLR | 300 |
| AEFEQGIPQQ LAVNLIGHFR YLSGLQEAAH ALGRALERAN VRCGRRDIPV LFETNWADRE | 360 |
| RYQEIETHEI SIATVAVNSF LNEQIPFSGM RLRSDVHRIA VWYWELEEVP HVWQHADDAV | 420 |
| SEIWAPTRFI ADAFRARFRR PVVTMLPGVE LPKVPHIDRS EWGFHKDECV FLFVFDMASM | 480 |
| MVRKNPIGLI EAFGRAFPKQ SGAKLVIKVN RSHRYPQERQ QLLEAASKVG ATVLEGLWPR | 540 |
| ERVLGLMQAA DAFVSLHRSE GLGLTMAEAM LLGKPVIASG YSGNLDFMTS DNSLLVDTKR | 600 |
| VLIQEDVGPY PKGIGWGDPC LDHAAHWMRW IRENPQAARD LGARAKLDLE SQLSLQAFGQ | 660 |
| RMLARLQQIQ AERRSRN | 677 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.