Information for CAZyme ID: VFJ12729.1
Basic Information
GenBank ID | VFJ12729.1 |
Family | GT2 |
Sequence Length | 411 |
UniProt ID | A0A484I7F5(100,100)![]() |
Average pLDDT? | 90.42 |
CAZy50 ID | 93339 |
CAZy50 Rep | Yes, VFJ12729.1 |
Structure Cluster | SC_GT2_clus298 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1798806 |
Kingdom | Archaea |
Phylum | Nitrososphaerota |
Class | Nitrososphaeria |
Order | Nitrososphaerales |
Family | Nitrososphaeraceae |
Genus | Candidatus Nitrosocosmicus |
Species | Candidatus Nitrosocosmicus franklandus |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MSLYGTRGFE FLLDVLLLLN LLFSIIVLGA IGIWIYLLVM LKRSFDLSPI IRRKNGHYCH | 60 |
NELVSIIIPA RNEEKYILKC VTSLLDQNAN NCEILLIDDN STDSTFSLMQ KLEDNHKIRV | 120 |
FKAGPKPKGW IGKNWPCYVG YVNAKGNYLM FTDADTIHSK NSIRDSIRTL KEENLDVLTA | 180 |
VPKLKYPNLI VKLVLPVLSI FMFSRYSPMR VNDPNVKIGY LFGSFFVITR DCYERVGTHE | 240 |
AVKSEIVEDG ALGKKLKEEG FRLKMFRGEN LLEAFWARDF GTLWNSLKRL IIPLYFTDRR | 300 |
NSVVMTLGIF LLMSFPFVIV SYISLVIAFS AQPNWSSYCL LILSLICVII ILITNYYQLK | 360 |
KANTHSTFYF VGAPVGCMIV SFSFIWSILT FRNNAKVRWR DSEYNYNEIN L | 411 |
Predicted 3D structure by AlphaFold2 with pLDDT = 90.42 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MSLYGTRGFE FLLDVLLLLN LLFSIIVLGA IGIWIYLLVM LKRSFDLSPI IRRKNGHYCH | 60 |
NELVSIIIPA RNEEKYILKC VTSLLDQNAN NCEILLIDDN STDSTFSLMQ KLEDNHKIRV | 120 |
FKAGPKPKGW IGKNWPCYVG YVNAKGNYLM FTDADTIHSK NSIRDSIRTL KEENLDVLTA | 180 |
VPKLKYPNLI VKLVLPVLSI FMFSRYSPMR VNDPNVKIGY LFGSFFVITR DCYERVGTHE | 240 |
AVKSEIVEDG ALGKKLKEEG FRLKMFRGEN LLEAFWARDF GTLWNSLKRL IIPLYFTDRR | 300 |
NSVVMTLGIF LLMSFPFVIV SYISLVIAFS AQPNWSSYCL LILSLICVII ILITNYYQLK | 360 |
KANTHSTFYF VGAPVGCMIV SFSFIWSILT FRNNAKVRWR DSEYNYNEIN L | 411 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.