Information for CAZyme ID: VEP40064.1
Basic Information
| GenBank ID | VEP40064.1 |
| Family | GT87 |
| Sequence Length | 440 |
| UniProt ID | A0A807N3I8(99.8,95.2) |
| Average pLDDT? | 90.45 |
| CAZy50 ID | 82686 |
| CAZy50 Rep | Yes, VEP40064.1 |
| Structure Cluster | SC_GT87_clus8 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1427523 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Propionibacteriales |
| Family | Propionibacteriaceae |
| Genus | Tessaracoccus |
| Species | Tessaracoccus lapidicaptus |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MSGPVARPER TRPLRGTYDE AVTRRLPSSS VTAWAGLILI LAALALSMYA VIYGRWSEEP | 60 |
| FLPQRFDLDP PYRIDLDVYR LGGQMLLSGG DLYGRLPDTA IGANLPFTYP PLAALLFAPL | 120 |
| AWLSLDHANL VFSLVTVALT LVAMTLAVRE VTRLRGRHLV VAGLVAGTAA LWLGPVRETV | 180 |
| EFGQVNVALM ALVLVDVVAG RGKPWQGVLT GLAMAIKLTP AVFLAYFLVR RDWRALATAI | 240 |
| VAAIGFTLLG FAVAWQDSIT YWTRTITDPT RIGSPAYVSN QSLTGALHRL GLGDTATLIW | 300 |
| FVTCAVLGLS LLVVMHHLFR SGQDLAALLT MGVYALLASP VSWSHHWVWA GPALLLLVVR | 360 |
| ARRRLSLTAA AMAAVGLGLF VGRLIWDLPD AALDGLSLTW QQQLVANAQL LWGVALLAYL | 420 |
| ALTARGADDR PVAADARVSA | 440 |
Predicted 3D structure by AlphaFold2 with pLDDT = 90.45 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MSGPVARPER TRPLRGTYDE AVTRRLPSSS VTAWAGLILI LAALALSMYA VIYGRWSEEP | 60 |
| FLPQRFDLDP PYRIDLDVYR LGGQMLLSGG DLYGRLPDTA IGANLPFTYP PLAALLFAPL | 120 |
| AWLSLDHANL VFSLVTVALT LVAMTLAVRE VTRLRGRHLV VAGLVAGTAA LWLGPVRETV | 180 |
| EFGQVNVALM ALVLVDVVAG RGKPWQGVLT GLAMAIKLTP AVFLAYFLVR RDWRALATAI | 240 |
| VAAIGFTLLG FAVAWQDSIT YWTRTITDPT RIGSPAYVSN QSLTGALHRL GLGDTATLIW | 300 |
| FVTCAVLGLS LLVVMHHLFR SGQDLAALLT MGVYALLASP VSWSHHWVWA GPALLLLVVR | 360 |
| ARRRLSLTAA AMAAVGLGLF VGRLIWDLPD AALDGLSLTW QQQLVANAQL LWGVALLAYL | 420 |
| ALTARGADDR PVAADARVSA | 440 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.