CAZyme3D

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Entry ID

Information for CAZyme ID: VEC51885.1

Basic Information

GenBank IDVEC51885.1
FamilyGH2
Sequence Length752
UniProt IDVEC51885.1(MOD)Download
Average pLDDT?87.86
CAZy50 ID32512
CAZy50 RepYes, VEC51885.1
Structure ClusterSC_GH2_clus156
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID562
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLMVHDHALM  DWIGANSYRT  SHYPYAEEML  DWADEHGIVV  IDETAAVGFN  LSLGIGFEAG60
NKPKELYSEE  AVNGETQQAH  LQAIKELIAR  DKNHPSVVMW  SIANEPDTRP  QGAREYFAPL120
AEATRKLDPT  RPITCVNVMF  CDAHTDTISD  LFDVLCLNRY  YGWYVQSGDL  ETAEKVLEKE180
LLAWQEKLHQ  PIIITEYGVD  TLAGLHSMYT  DMWSEEYQCA  WLDMYHRVFD  RVSAVVGEQV240
WNFADFATSQ  GILRVGGNKK  GIFTRDRKPK  SAAFLLQKRW  TGMNFGEKTA  AGRQTMNQQL300
SWRTIVGYSL  GDVANNFAFA  MGALFLLSYY  TDVAGVGAAA  AGTMLLLVRV  FDAFADVFAG360
RVVDSVNTRW  GKFRPFLLFG  TAPLMIFSVL  VFWVPTDWSH  GSKVVYAYLT  YMGLGLCYSL420
VNIPYGSLAT  AMTQQPQSRA  RLGAARGIAA  SLTFVCLAFL  IGPSIKNSSP  EEMVSVYHFW480
TIVLAIAGMV  LYFICFKSTR  ENVVRIVAQP  SLKISLQTLK  RNRPLFMLCI  GALCVLISTF540
AVSASSLFYV  RYVLNDTGLF  TVLVLVQNLV  GTVASAPLVP  GMVARIGKKN  TFLIGALLGT600
CGYLLFFWVS  VWSLPVALVA  LAIASIGQGV  TMTVMWALEA  DTVEYGEYLT  GVRIEGLTYS660
LFSFTRKCGQ  AIGGSIPAFI  LGLSGYIANQ  VQTPEVIMGI  RTSIALVPCG  FMLLAFVIIW720
FYPLTDKKFK  EIVVEIDNRK  KVQQQLISDI  TN752

Predicted 3D structure by AlphaFold2 with pLDDT = 87.86 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLMVHDHALM  DWIGANSYRT  SHYPYAEEML  DWADEHGIVV  IDETAAVGFN  LSLGIGFEAG60
NKPKELYSEE  AVNGETQQAH  LQAIKELIAR  DKNHPSVVMW  SIANEPDTRP  QGAREYFAPL120
AEATRKLDPT  RPITCVNVMF  CDAHTDTISD  LFDVLCLNRY  YGWYVQSGDL  ETAEKVLEKE180
LLAWQEKLHQ  PIIITEYGVD  TLAGLHSMYT  DMWSEEYQCA  WLDMYHRVFD  RVSAVVGEQV240
WNFADFATSQ  GILRVGGNKK  GIFTRDRKPK  SAAFLLQKRW  TGMNFGEKTA  AGRQTMNQQL300
SWRTIVGYSL  GDVANNFAFA  MGALFLLSYY  TDVAGVGAAA  AGTMLLLVRV  FDAFADVFAG360
RVVDSVNTRW  GKFRPFLLFG  TAPLMIFSVL  VFWVPTDWSH  GSKVVYAYLT  YMGLGLCYSL420
VNIPYGSLAT  AMTQQPQSRA  RLGAARGIAA  SLTFVCLAFL  IGPSIKNSSP  EEMVSVYHFW480
TIVLAIAGMV  LYFICFKSTR  ENVVRIVAQP  SLKISLQTLK  RNRPLFMLCI  GALCVLISTF540
AVSASSLFYV  RYVLNDTGLF  TVLVLVQNLV  GTVASAPLVP  GMVARIGKKN  TFLIGALLGT600
CGYLLFFWVS  VWSLPVALVA  LAIASIGQGV  TMTVMWALEA  DTVEYGEYLT  GVRIEGLTYS660
LFSFTRKCGQ  AIGGSIPAFI  LGLSGYIANQ  VQTPEVIMGI  RTSIALVPCG  FMLLAFVIIW720
FYPLTDKKFK  EIVVEIDNRK  KVQQQLISDI  TN752

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MLMVHDHALM  DWIGANSYRT  SHYPYAEEML  DWADEHGIVV  IDETAAVGFN  LSLGIGFEAG60
NKPKELYSEE  AVNGETQQAH  LQAIKELIAR  DKNHPSVVMW  SIANEPDTRP  QGAREYFAPL120
AEATRKLDPT  RPITCVNVMF  CDAHTDTISD  LFDVLCLNRY  YGWYVQSGDL  ETAEKVLEKE180
LLAWQEKLHQ  PIIITEYGVD  TLAGLHSMYT  DMWSEEYQCA  WLDMYHRVFD  RVSAVVGEQV240
WNFADFATSQ  GILRVGGNKK  GIFTRDRKPK  SAAFLLQKRW  TGMNFGEKTA  AGRQTMNQQL300
SWRTIVGYSL  GDVANNFAFA  MGALFLLSYY  TDVAGVGAAA  AGTMLLLVRV  FDAFADVFAG360
RVVDSVNTRW  GKFRPFLLFG  TAPLMIFSVL  VFWVPTDWSH  GSKVVYAYLT  YMGLGLCYSL420
VNIPYGSLAT  AMTQQPQSRA  RLGAARGIAA  SLTFVCLAFL  IGPSIKNSSP  EEMVSVYHFW480
TIVLAIAGMV  LYFICFKSTR  ENVVRIVAQP  SLKISLQTLK  RNRPLFMLCI  GALCVLISTF540
AVSASSLFYV  RYVLNDTGLF  TVLVLVQNLV  GTVASAPLVP  GMVARIGKKN  TFLIGALLGT600
CGYLLFFWVS  VWSLPVALVA  LAIASIGQGV  TMTVMWALEA  DTVEYGEYLT  GVRIEGLTYS660
LFSFTRKCGQ  AIGGSIPAFI  LGLSGYIANQ  VQTPEVIMGI  RTSIALVPCG  FMLLAFVIIW720
FYPLTDKKFK  EIVVEIDNRK  KVQQQLISDI  TN752

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help