Information for CAZyme ID: VEC51885.1
Basic Information
GenBank ID | VEC51885.1 |
Family | GH2 |
Sequence Length | 752 |
UniProt ID | VEC51885.1(MOD)![]() |
Average pLDDT? | 87.86 |
CAZy50 ID | 32512 |
CAZy50 Rep | Yes, VEC51885.1 |
Structure Cluster | SC_GH2_clus156 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 562 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Gammaproteobacteria |
Order | Enterobacterales |
Family | Enterobacteriaceae |
Genus | Escherichia |
Species | Escherichia coli |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MLMVHDHALM DWIGANSYRT SHYPYAEEML DWADEHGIVV IDETAAVGFN LSLGIGFEAG | 60 |
NKPKELYSEE AVNGETQQAH LQAIKELIAR DKNHPSVVMW SIANEPDTRP QGAREYFAPL | 120 |
AEATRKLDPT RPITCVNVMF CDAHTDTISD LFDVLCLNRY YGWYVQSGDL ETAEKVLEKE | 180 |
LLAWQEKLHQ PIIITEYGVD TLAGLHSMYT DMWSEEYQCA WLDMYHRVFD RVSAVVGEQV | 240 |
WNFADFATSQ GILRVGGNKK GIFTRDRKPK SAAFLLQKRW TGMNFGEKTA AGRQTMNQQL | 300 |
SWRTIVGYSL GDVANNFAFA MGALFLLSYY TDVAGVGAAA AGTMLLLVRV FDAFADVFAG | 360 |
RVVDSVNTRW GKFRPFLLFG TAPLMIFSVL VFWVPTDWSH GSKVVYAYLT YMGLGLCYSL | 420 |
VNIPYGSLAT AMTQQPQSRA RLGAARGIAA SLTFVCLAFL IGPSIKNSSP EEMVSVYHFW | 480 |
TIVLAIAGMV LYFICFKSTR ENVVRIVAQP SLKISLQTLK RNRPLFMLCI GALCVLISTF | 540 |
AVSASSLFYV RYVLNDTGLF TVLVLVQNLV GTVASAPLVP GMVARIGKKN TFLIGALLGT | 600 |
CGYLLFFWVS VWSLPVALVA LAIASIGQGV TMTVMWALEA DTVEYGEYLT GVRIEGLTYS | 660 |
LFSFTRKCGQ AIGGSIPAFI LGLSGYIANQ VQTPEVIMGI RTSIALVPCG FMLLAFVIIW | 720 |
FYPLTDKKFK EIVVEIDNRK KVQQQLISDI TN | 752 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.86 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MLMVHDHALM DWIGANSYRT SHYPYAEEML DWADEHGIVV IDETAAVGFN LSLGIGFEAG | 60 |
NKPKELYSEE AVNGETQQAH LQAIKELIAR DKNHPSVVMW SIANEPDTRP QGAREYFAPL | 120 |
AEATRKLDPT RPITCVNVMF CDAHTDTISD LFDVLCLNRY YGWYVQSGDL ETAEKVLEKE | 180 |
LLAWQEKLHQ PIIITEYGVD TLAGLHSMYT DMWSEEYQCA WLDMYHRVFD RVSAVVGEQV | 240 |
WNFADFATSQ GILRVGGNKK GIFTRDRKPK SAAFLLQKRW TGMNFGEKTA AGRQTMNQQL | 300 |
SWRTIVGYSL GDVANNFAFA MGALFLLSYY TDVAGVGAAA AGTMLLLVRV FDAFADVFAG | 360 |
RVVDSVNTRW GKFRPFLLFG TAPLMIFSVL VFWVPTDWSH GSKVVYAYLT YMGLGLCYSL | 420 |
VNIPYGSLAT AMTQQPQSRA RLGAARGIAA SLTFVCLAFL IGPSIKNSSP EEMVSVYHFW | 480 |
TIVLAIAGMV LYFICFKSTR ENVVRIVAQP SLKISLQTLK RNRPLFMLCI GALCVLISTF | 540 |
AVSASSLFYV RYVLNDTGLF TVLVLVQNLV GTVASAPLVP GMVARIGKKN TFLIGALLGT | 600 |
CGYLLFFWVS VWSLPVALVA LAIASIGQGV TMTVMWALEA DTVEYGEYLT GVRIEGLTYS | 660 |
LFSFTRKCGQ AIGGSIPAFI LGLSGYIANQ VQTPEVIMGI RTSIALVPCG FMLLAFVIIW | 720 |
FYPLTDKKFK EIVVEIDNRK KVQQQLISDI TN | 752 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.