Information for CAZyme ID: VDD12656.1
Basic Information
GenBank ID | VDD12656.1 |
Family | PL4 |
Sequence Length | 606 |
UniProt ID | A0A3P6CBA9(100,100)![]() |
Average pLDDT? | 86.56 |
CAZy50 ID | 51555 |
CAZy50 Rep | Yes, VDD12656.1 |
Structure Cluster | SC_PL4_clus6 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 3712 |
Kingdom | Eukaryota |
Phylum | Streptophyta |
Class | Magnoliopsida |
Order | Brassicales |
Family | Brassicaceae |
Genus | Brassica |
Species | Brassica oleracea |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MKVGAPRKIR SWVVFQVLLL HLLPQAVHSQ RSQNKLNITK PGENISSLTI QLRGVVVDNG | 60 |
IVQVTFSSPQ GSITGIKYDG IDNVLDDEVD ERRRGYWDVA WYEPEKKFKT DKLEGTRFEI | 120 |
ITQNEEQVEI SFTRTWTISK RGSLVPLNVD KRYIIRSGVS GIYIYCIMER LEGWPDVDMD | 180 |
QIRIVFKLNH TIFNFMAISD DRQRSMPSMA DRNHAMQLAY KEAVLLTNPR NPMFKGEVDD | 240 |
KYMYSMEDKD NNVHGWISSE PPVGFWMITP SDEFRLGGPI KQDLTSHAGP ITLSMFTSTH | 300 |
YAGKEMRMGY RNGEPWKKVF GPVLAYLNSV SPNASTLRLW RDAKRQGYQF WTKADRKGRF | 360 |
IIENVRAGNY SLYAWGIGFI GDYKYEQNIT ITPGTEMNVG PIVYEPPRNG PTLWEIGVPD | 420 |
RTAGEFYIPD PYPTLMNNLY VNPLQDRFRQ YGLWDRYSDL YPENDLVYTI GLSNYRRDWF | 480 |
FAHVTRNVGN NTYQPTTWQI VFNLQNLNRV GLYTLRVALA SAADSELQVR INDPESDHIF | 540 |
TTGLIGKDNA IARHGIHGLY RLYSIDVAGN LLGAGDNTIY LTQSRSTTPF QGVMYDYIRL | 600 |
ESPFKT | 606 |
Predicted 3D structure by AlphaFold2 with pLDDT = 86.56 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MKVGAPRKIR SWVVFQVLLL HLLPQAVHSQ RSQNKLNITK PGENISSLTI QLRGVVVDNG | 60 |
IVQVTFSSPQ GSITGIKYDG IDNVLDDEVD ERRRGYWDVA WYEPEKKFKT DKLEGTRFEI | 120 |
ITQNEEQVEI SFTRTWTISK RGSLVPLNVD KRYIIRSGVS GIYIYCIMER LEGWPDVDMD | 180 |
QIRIVFKLNH TIFNFMAISD DRQRSMPSMA DRNHAMQLAY KEAVLLTNPR NPMFKGEVDD | 240 |
KYMYSMEDKD NNVHGWISSE PPVGFWMITP SDEFRLGGPI KQDLTSHAGP ITLSMFTSTH | 300 |
YAGKEMRMGY RNGEPWKKVF GPVLAYLNSV SPNASTLRLW RDAKRQGYQF WTKADRKGRF | 360 |
IIENVRAGNY SLYAWGIGFI GDYKYEQNIT ITPGTEMNVG PIVYEPPRNG PTLWEIGVPD | 420 |
RTAGEFYIPD PYPTLMNNLY VNPLQDRFRQ YGLWDRYSDL YPENDLVYTI GLSNYRRDWF | 480 |
FAHVTRNVGN NTYQPTTWQI VFNLQNLNRV GLYTLRVALA SAADSELQVR INDPESDHIF | 540 |
TTGLIGKDNA IARHGIHGLY RLYSIDVAGN LLGAGDNTIY LTQSRSTTPF QGVMYDYIRL | 600 |
ESPFKT | 606 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.