Information for CAZyme ID: VDC77869.1
Basic Information
| GenBank ID | VDC77869.1 |
| Family | GT47 |
| Sequence Length | 639 |
| UniProt ID | A0A3P5ZI72(100,100) |
| Average pLDDT? | 69.21 |
| CAZy50 ID | 46874 |
| CAZy50 Rep | Yes, VDC77869.1 |
| Structure Cluster | SC_GT47_clus13 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 3711 |
| Kingdom | Eukaryota |
| Phylum | Streptophyta |
| Class | Magnoliopsida |
| Order | Brassicales |
| Family | Brassicaceae |
| Genus | Brassica |
| Species | Brassica rapa |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MRDYLPKYLN AFLLAFATFA VVFAIFIAKD PNTSHHLYFS TSSSSLWTSS FSSAFITVYM | 60 |
| SIFIPFHPHF DCNKCLKLRF NCLCYEKRKR NGSNPGSLSW KRDKKVEAEL ATARALIREA | 120 |
| QLNPNSTTSS PLRDEDYVPH GEIYRNPYAF HRSYLLMEKM FKIYVYEEGD PPIFHYGLCK | 180 |
| DIYSMEGLLL NFMENDVLTY RTRDPDKAHV YFLPFSVVMI LHHLFDPVVR DKAVLERVIV | 240 |
| DYVQIISEKY PYWNTSDGFD HFMLSCHDWG HRATWYVKKL FFNSIRVLCN ANISEYFNPE | 300 |
| KDAPFPEINL QTGEINNLTG GLDPMSRTTL AFFAGQSHGK IRPVLLNHWK EKDKDILVYE | 360 |
| DLPGELDYKE MMRKSRFCIC PSGHEVASPR VPEAIYSGCV PVLISENYVL PFSDVLNWEK | 420 |
| FSVSVSVKEI PELKRILMDI PEDRYKKLYE GVKQVQRHIL VNDPPKRYDQ KILIRVTMTD | 480 |
| DKARAKAMKT AVKFKGVSAV EIKGDHRNQI EVTGVEVDMI GLTNTLRRKV ACAELVSVNK | 540 |
| VEPPKPEEDK KPEEKKPEEK KPDEAKPEEK KPDEKKPEEE KQEPCHCHPP CHQPCHQQPW | 600 |
| PYGYGMPSSY HHPCNPYGYN ARDYIGEPVY NHEPNCTIL | 639 |
Predicted 3D structure by AlphaFold2 with pLDDT = 69.21 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MRDYLPKYLN AFLLAFATFA VVFAIFIAKD PNTSHHLYFS TSSSSLWTSS FSSAFITVYM | 60 |
| SIFIPFHPHF DCNKCLKLRF NCLCYEKRKR NGSNPGSLSW KRDKKVEAEL ATARALIREA | 120 |
| QLNPNSTTSS PLRDEDYVPH GEIYRNPYAF HRSYLLMEKM FKIYVYEEGD PPIFHYGLCK | 180 |
| DIYSMEGLLL NFMENDVLTY RTRDPDKAHV YFLPFSVVMI LHHLFDPVVR DKAVLERVIV | 240 |
| DYVQIISEKY PYWNTSDGFD HFMLSCHDWG HRATWYVKKL FFNSIRVLCN ANISEYFNPE | 300 |
| KDAPFPEINL QTGEINNLTG GLDPMSRTTL AFFAGQSHGK IRPVLLNHWK EKDKDILVYE | 360 |
| DLPGELDYKE MMRKSRFCIC PSGHEVASPR VPEAIYSGCV PVLISENYVL PFSDVLNWEK | 420 |
| FSVSVSVKEI PELKRILMDI PEDRYKKLYE GVKQVQRHIL VNDPPKRYDQ KILIRVTMTD | 480 |
| DKARAKAMKT AVKFKGVSAV EIKGDHRNQI EVTGVEVDMI GLTNTLRRKV ACAELVSVNK | 540 |
| VEPPKPEEDK KPEEKKPEEK KPDEAKPEEK KPDEKKPEEE KQEPCHCHPP CHQPCHQQPW | 600 |
| PYGYGMPSSY HHPCNPYGYN ARDYIGEPVY NHEPNCTIL | 639 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.