CAZyme3D

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Entry ID

Information for CAZyme ID: VDC77701.1

Basic Information

GenBank IDVDC77701.1
FamilyGH85
Sequence Length994
UniProt IDA0A3P5ZYY0(100,100)Download
Average pLDDT?71.36
CAZy50 ID14627
CAZy50 RepYes, VDC77701.1
Structure ClusterSC_GH85_clus14
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3711
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusBrassica
SpeciesBrassica rapa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

ESWVNNSDCC  NWEGITCNPN  SGEVIELNLS  CSYLRGKFHS  KSSLRNLHSL  TTLVLSNNDF60
SGPIMSLIGN  LSHLTSLDLS  RNGFSEFIPS  SIVDLSYLTF  LDLSSNRFSG  QIPSSIGNLS120
HLTYLDLSGN  PFLSQIPSSI  GNLSYLTYLD  LSWNFLSGPI  PSLIGNLSHL  TYLNLYFNQI180
SGKIPSSIGN  LYNLTYLDLS  ANNIVGEIPS  SFGNLNQLTS  LNLSSLKLYD  NQFTGTIPHN240
ITSLSKLTTF  YASSNAFTGT  LPSSLFTIPS  MESVILYDNQ  LNGILDLDLS  GNHVSATNKS300
PVSDPPLLRY  LVLSGCGITE  LPEFVRNQHM  ETLDISNNKI  KGQVPGWLWT  LPNLTYLNLS360
NNTFTGFENS  TTVLVSRLSS  LNLLASDNNF  TGKIPSFICD  LRNVDTLDLS  NNNFSGLIPP420
CLGNLNRSLE  VLNLRQNRLR  GGLPKNIFES  LRTLDIGHNQ  LTGKLPRTLI  HFSSLEVLNV480
ESNIFNDTFP  FWLHSLRELK  ILVLRSNAFH  GPILQTSFPK  LQIIDISHNH  FNGSLSSDYF540
VKWSAMLSLG  ENYDQRDDNY  MGGFYYHDSM  VLMNKGIEME  FVRILKIYTA  LDFSGNKFEG600
EIPRSIGLLK  ELHVLNLSNN  AFTGHIPSSL  GNLTALESLD  VSQNQLSGEI  PEELGSLSFL660
SYMNFSHNQL  TGLVPGGTQF  QRLNCTSFDG  NPGLSGPSLD  EICRDIHTPT  PHETPESEDE720
EEEEEEVLSW  IAAVIGVIPG  IAFGWAIGYI  LFSILELVQV  KSDETSKLGL  LLCFSSPSHE780
TKSILVAPQE  PTSRFDHMFL  KCLVASKQTV  SEWTVHETSL  VMDGHTLTEI  SAFCYGPDNS840
TKTSEYVALL  GHISIKDHHV  QLQQNLVSLP  LPSSWIIEAH  NIELVTGNSG  SKILRVKLEW900
RQKELEDSVL  PVYNVYAESV  KSTDVLRSRK  VLEKPRSERV  FLGVSHVPAY  YVSELVVDSD960
VKGVSFVVQP  CGEDGSWMNV  DVSPNHLVDL  EGLS994

Predicted 3D structure by AlphaFold2 with pLDDT = 71.36 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

ESWVNNSDCC  NWEGITCNPN  SGEVIELNLS  CSYLRGKFHS  KSSLRNLHSL  TTLVLSNNDF60
SGPIMSLIGN  LSHLTSLDLS  RNGFSEFIPS  SIVDLSYLTF  LDLSSNRFSG  QIPSSIGNLS120
HLTYLDLSGN  PFLSQIPSSI  GNLSYLTYLD  LSWNFLSGPI  PSLIGNLSHL  TYLNLYFNQI180
SGKIPSSIGN  LYNLTYLDLS  ANNIVGEIPS  SFGNLNQLTS  LNLSSLKLYD  NQFTGTIPHN240
ITSLSKLTTF  YASSNAFTGT  LPSSLFTIPS  MESVILYDNQ  LNGILDLDLS  GNHVSATNKS300
PVSDPPLLRY  LVLSGCGITE  LPEFVRNQHM  ETLDISNNKI  KGQVPGWLWT  LPNLTYLNLS360
NNTFTGFENS  TTVLVSRLSS  LNLLASDNNF  TGKIPSFICD  LRNVDTLDLS  NNNFSGLIPP420
CLGNLNRSLE  VLNLRQNRLR  GGLPKNIFES  LRTLDIGHNQ  LTGKLPRTLI  HFSSLEVLNV480
ESNIFNDTFP  FWLHSLRELK  ILVLRSNAFH  GPILQTSFPK  LQIIDISHNH  FNGSLSSDYF540
VKWSAMLSLG  ENYDQRDDNY  MGGFYYHDSM  VLMNKGIEME  FVRILKIYTA  LDFSGNKFEG600
EIPRSIGLLK  ELHVLNLSNN  AFTGHIPSSL  GNLTALESLD  VSQNQLSGEI  PEELGSLSFL660
SYMNFSHNQL  TGLVPGGTQF  QRLNCTSFDG  NPGLSGPSLD  EICRDIHTPT  PHETPESEDE720
EEEEEEVLSW  IAAVIGVIPG  IAFGWAIGYI  LFSILELVQV  KSDETSKLGL  LLCFSSPSHE780
TKSILVAPQE  PTSRFDHMFL  KCLVASKQTV  SEWTVHETSL  VMDGHTLTEI  SAFCYGPDNS840
TKTSEYVALL  GHISIKDHHV  QLQQNLVSLP  LPSSWIIEAH  NIELVTGNSG  SKILRVKLEW900
RQKELEDSVL  PVYNVYAESV  KSTDVLRSRK  VLEKPRSERV  FLGVSHVPAY  YVSELVVDSD960
VKGVSFVVQP  CGEDGSWMNV  DVSPNHLVDL  EGLS994

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

ESWVNNSDCC  NWEGITCNPN  SGEVIELNLS  CSYLRGKFHS  KSSLRNLHSL  TTLVLSNNDF60
SGPIMSLIGN  LSHLTSLDLS  RNGFSEFIPS  SIVDLSYLTF  LDLSSNRFSG  QIPSSIGNLS120
HLTYLDLSGN  PFLSQIPSSI  GNLSYLTYLD  LSWNFLSGPI  PSLIGNLSHL  TYLNLYFNQI180
SGKIPSSIGN  LYNLTYLDLS  ANNIVGEIPS  SFGNLNQLTS  LNLSSLKLYD  NQFTGTIPHN240
ITSLSKLTTF  YASSNAFTGT  LPSSLFTIPS  MESVILYDNQ  LNGILDLDLS  GNHVSATNKS300
PVSDPPLLRY  LVLSGCGITE  LPEFVRNQHM  ETLDISNNKI  KGQVPGWLWT  LPNLTYLNLS360
NNTFTGFENS  TTVLVSRLSS  LNLLASDNNF  TGKIPSFICD  LRNVDTLDLS  NNNFSGLIPP420
CLGNLNRSLE  VLNLRQNRLR  GGLPKNIFES  LRTLDIGHNQ  LTGKLPRTLI  HFSSLEVLNV480
ESNIFNDTFP  FWLHSLRELK  ILVLRSNAFH  GPILQTSFPK  LQIIDISHNH  FNGSLSSDYF540
VKWSAMLSLG  ENYDQRDDNY  MGGFYYHDSM  VLMNKGIEME  FVRILKIYTA  LDFSGNKFEG600
EIPRSIGLLK  ELHVLNLSNN  AFTGHIPSSL  GNLTALESLD  VSQNQLSGEI  PEELGSLSFL660
SYMNFSHNQL  TGLVPGGTQF  QRLNCTSFDG  NPGLSGPSLD  EICRDIHTPT  PHETPESEDE720
EEEEEEVLSW  IAAVIGVIPG  IAFGWAIGYI  LFSILELVQV  KSDETSKLGL  LLCFSSPSHE780
TKSILVAPQE  PTSRFDHMFL  KCLVASKQTV  SEWTVHETSL  VMDGHTLTEI  SAFCYGPDNS840
TKTSEYVALL  GHISIKDHHV  QLQQNLVSLP  LPSSWIIEAH  NIELVTGNSG  SKILRVKLEW900
RQKELEDSVL  PVYNVYAESV  KSTDVLRSRK  VLEKPRSERV  FLGVSHVPAY  YVSELVVDSD960
VKGVSFVVQP  CGEDGSWMNV  DVSPNHLVDL  EGLS994

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help