CAZyme3D

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Entry ID

Information for CAZyme ID: VDB84094.1

Basic Information

GenBank IDVDB84094.1
FamilyCBM18, GH18
Sequence Length470
UniProt IDA0A9X9QC12(100,100)Download
Average pLDDT?89.07
CAZy50 ID75543
CAZy50 RepYes, VDB84094.1
Structure ClusterSC_GH18_clus3
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID62690
KingdomEukaryota
PhylumAscomycota
ClassLeotiomycetes
OrderErysiphales
FamilyErysiphaceae
GenusBlumeria
SpeciesBlumeria graminis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKISQRLVGV  VLSTVLTQAR  NVFYYDEEHP  HLPDPKVTAD  VDHVNIAHAK  SSIFTTNPAG60
EYAPFQNLSS  LKAHFKPDTK  FLISIGGWGD  IGFRKAAATE  DSRKLFASNI  AELLKKLSLD120
GVDIDWRYPG  GNGDDYRQVL  NWDLAAEPGT  YPLLLSEIRS  AIGSKKILSI  AAPGKPENMI180
VYTPHNATSI  WNLVDWVNVM  TYDLMDRRDG  ITKHHTDVET  SLKIVDHYID  NLKLEPHKIN240
LGFAMFAKWF  KVDPMEKCET  GLGCITLLLE  TQDGIDTQSS  GSITFETANL  APPPSNITET300
TDGTCGPEIF  KTCKKGHCCS  IYGYCGTTED  YCNNCEGVAY  GSGCKAVSLK  SQFQTAMLNG360
ITDSKMGGQY  YYDRSRSTFW  TWETPDLIAQ  KFEKIMAARK  LGGVMVWSLG  EDSYDNSHLI420
AIREGNSYLK  DPSAYQKKKP  NNVAKPIQPI  QSPQPEPKPQ  PSKTHWWKFW  470

Predicted 3D structure by AlphaFold2 with pLDDT = 89.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKISQRLVGV  VLSTVLTQAR  NVFYYDEEHP  HLPDPKVTAD  VDHVNIAHAK  SSIFTTNPAG60
EYAPFQNLSS  LKAHFKPDTK  FLISIGGWGD  IGFRKAAATE  DSRKLFASNI  AELLKKLSLD120
GVDIDWRYPG  GNGDDYRQVL  NWDLAAEPGT  YPLLLSEIRS  AIGSKKILSI  AAPGKPENMI180
VYTPHNATSI  WNLVDWVNVM  TYDLMDRRDG  ITKHHTDVET  SLKIVDHYID  NLKLEPHKIN240
LGFAMFAKWF  KVDPMEKCET  GLGCITLLLE  TQDGIDTQSS  GSITFETANL  APPPSNITET300
TDGTCGPEIF  KTCKKGHCCS  IYGYCGTTED  YCNNCEGVAY  GSGCKAVSLK  SQFQTAMLNG360
ITDSKMGGQY  YYDRSRSTFW  TWETPDLIAQ  KFEKIMAARK  LGGVMVWSLG  EDSYDNSHLI420
AIREGNSYLK  DPSAYQKKKP  NNVAKPIQPI  QSPQPEPKPQ  PSKTHWWKFW  470

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(20-420)

MKISQRLVGV  VLSTVLTQAR  NVFYYDEEHP  HLPDPKVTAD  VDHVNIAHAK  SSIFTTNPAG60
EYAPFQNLSS  LKAHFKPDTK  FLISIGGWGD  IGFRKAAATE  DSRKLFASNI  AELLKKLSLD120
GVDIDWRYPG  GNGDDYRQVL  NWDLAAEPGT  YPLLLSEIRS  AIGSKKILSI  AAPGKPENMI180
VYTPHNATSI  WNLVDWVNVM  TYDLMDRRDG  ITKHHTDVET  SLKIVDHYID  NLKLEPHKIN240
LGFAMFAKWF  KVDPMEKCET  GLGCITLLLE  TQDGIDTQSS  GSITFETANL  APPPSNITET300
TDGTCGPEIF  KTCKKGHCCS  IYGYCGTTED  YCNNCEGVAY  GSGCKAVSLK  SQFQTAMLNG360
ITDSKMGGQY  YYDRSRSTFW  TWETPDLIAQ  KFEKIMAARK  LGGVMVWSLG  EDSYDNSHLI420
AIREGNSYLK  DPSAYQKKKP  NNVAKPIQPI  QSPQPEPKPQ  PSKTHWWKFW  470

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help