CAZyme3D

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Entry ID

Information for CAZyme ID: VBB79644.1

Basic Information

GenBank IDVBB79644.1
FamilyGH114
Sequence Length332
UniProt IDA0A447C891(100,100)Download
Average pLDDT?87.11
CAZy50 ID140922
CAZy50 RepYes, VBB79644.1
Structure ClusterSC_GH114_clus7
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID48703
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderSordariales
FamilyPodosporaceae
GenusPodospora
SpeciesPodospora comata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEGKEGRLRR  NSRESRLSRR  QKLVLAAVAA  VLIIVLIVGL  GLGLGLRNRG  GGGGDDDSLP60
PAPQPTAIWQ  PKVNTSWQII  LNAKLDIDPN  NPAVEPDVDV  YDIDMFMHQN  SRAVSSLHKL120
NKKVICYFSA  GSYEKNRPDS  SKFPEEDIGL  VLDGWPDERW  LNISSPAIRE  IMVGRIEIAS180
RMGCDAVDPD  NVDGYQNENG  MDLTPEDSVS  FMTFLADEAH  KRNMAIGLKN  AGDIVKTMLP240
RMQFAVNEEC  AEFNDCRTFS  QFVDAGKPVF  HIEYPEGAPF  NTNAEQKQAY  CNAPGANGFS300
TILKGMNLNF  GAEYCDGRQV  RTKVLRRFSS  GR332

Predicted 3D structure by AlphaFold2 with pLDDT = 87.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MEGKEGRLRR  NSRESRLSRR  QKLVLAAVAA  VLIIVLIVGL  GLGLGLRNRG  GGGGDDDSLP60
PAPQPTAIWQ  PKVNTSWQII  LNAKLDIDPN  NPAVEPDVDV  YDIDMFMHQN  SRAVSSLHKL120
NKKVICYFSA  GSYEKNRPDS  SKFPEEDIGL  VLDGWPDERW  LNISSPAIRE  IMVGRIEIAS180
RMGCDAVDPD  NVDGYQNENG  MDLTPEDSVS  FMTFLADEAH  KRNMAIGLKN  AGDIVKTMLP240
RMQFAVNEEC  AEFNDCRTFS  QFVDAGKPVF  HIEYPEGAPF  NTNAEQKQAY  CNAPGANGFS300
TILKGMNLNF  GAEYCDGRQV  RTKVLRRFSS  GR332

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH114(77-274)

MEGKEGRLRR  NSRESRLSRR  QKLVLAAVAA  VLIIVLIVGL  GLGLGLRNRG  GGGGDDDSLP60
PAPQPTAIWQ  PKVNTSWQII  LNAKLDIDPN  NPAVEPDVDV  YDIDMFMHQN  SRAVSSLHKL120
NKKVICYFSA  GSYEKNRPDS  SKFPEEDIGL  VLDGWPDERW  LNISSPAIRE  IMVGRIEIAS180
RMGCDAVDPD  NVDGYQNENG  MDLTPEDSVS  FMTFLADEAH  KRNMAIGLKN  AGDIVKTMLP240
RMQFAVNEEC  AEFNDCRTFS  QFVDAGKPVF  HIEYPEGAPF  NTNAEQKQAY  CNAPGANGFS300
TILKGMNLNF  GAEYCDGRQV  RTKVLRRFSS  GR332

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help