CAZyme3D

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Entry ID

Information for CAZyme ID: UZQ86284.1

Basic Information

GenBank IDUZQ86284.1
FamilyCBM6, CBM91, GH43_10, GH43_16
Sequence Length1222
UniProt IDA0A1B1YBI7(99.8,99.9)Download
Average pLDDT?88.70
CAZy50 ID7465
CAZy50 RepYes, UZQ86284.1
Structure ClusterSC_CBM6_clus34, SC_CBM6_clus6, SC_CBM91_clus10, SC_CBM91_clus2, SC_GH43_clus270
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1510
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusThermoclostridium
SpeciesThermoclostridium stercorarium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMNTFSRRNL  LVAISVAVIA  ILVILSGILA  NKYRETSGNV  KEKEAVVTEK  DFGMAKNPII60
WADFPDPDVI  RIDGEYYMVS  TTMHMMPGTP  VLRSTDLVNW  EIISYTYERL  EENDAHNLRN120
GLNIYGKGAW  APCIRYHNGK  FYVLFAALDT  GKTYLFSADN  PKGPWERTEF  REYFHDPSLL180
FDDDGKAYII  YGRTNIMIKE  LTSDYKAVSP  SGLNKVIIAS  GQEGMEGSHA  YKINGKYYIT240
TIWWENGNIR  RQYVYRADQI  DGPYEGRLVL  SGTMGYKEHG  VAQGGLVDTP  DGKWYAMLFQ300
DHDAVGRVPV  LVPVRWEDGW  PVYGDEEGKV  PIQFNKPGDS  SFVSQLIVSD  EFYQEDAVDV360
NTGSLGAYDY  SDAKGSEFVA  NSGFNDLMNV  DDVSAEVNAL  NRAERDEALP  NGSVLGLTWQ420
WNHNPENTKW  SLTDRKGYLR  LWTCNEAENI  LQARNVLTQR  TQGPYCSGWI  LMDVTHMLDG480
DYAGLAAFQQ  EYGFIGVTRQ  DNDFYIVMVD  KGVEKARTKL  MQRQVYLKVD  FDFTVDEAAF540
FYSYNGRDWN  MFGGKLAMRY  TIPHFMGYRF  AIFNYATKQT  GGYVDVDFFR  FADRLTGTGT600
SADLKAYLTE  SEIELSGDPE  TVCEFGILIN  EVPGNESIYG  IHASLVIPEE  LAVIGVDVHE660
KNLNATKVEL  EPKDGRYDMM  IYNTGGQPIS  FINYGLDKEL  VSIKFRLSKK  IPESFSKEIL720
VKSVEFLRVN  NQKTSYDVDS  AILKVTFSAP  SNAVGKVPPN  GNPLISHKFG  ADPCVLVYKD780
RVYVYMTNDI  LEYDEKGEVK  DNTYGRINKI  SVISSDDLMN  WTDHGEIHVA  GPQGAAKWAS840
QSWAPAIAHK  VVNGKDKFFL  YFSNNASGIG  VLTGDSPVGP  WEDPLGRPLI  SRSTPGFKGV900
VWLFDPAVLT  DDDGKAYIYF  GGGVPDGRES  MPDTARVMQL  GDDMISVVGE  AVTIPVPFMF960
EASGINKYKG  VYYFTYCANF  YSGPRPEGSP  QAGVIAYMTS  SGPMGPWKYG  GTVLKNPGHF1020
FGVGGNNHHS  LFEFKGKWYI  VYHAQTLAKA  MGIPKGYRSP  HLNQVFFNDD  GTIQEVIANN1080
KGVPQVKYLD  PYTRVEAETF  AWNAGVSTKT  ISEGNPAQRA  LTDIDNGDWI  GLSKVDFGNK1140
GASTFTAMVS  NVSADSIIEI  HLDSVDGKLV  GTLAIPAGGG  KPEWKEYTTE  VSGVHGVHNL1200
YLVFKGKSEK  KLFDFDYWYF  SE1222

Predicted 3D structure by AlphaFold2 with pLDDT = 88.70 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MMNTFSRRNL  LVAISVAVIA  ILVILSGILA  NKYRETSGNV  KEKEAVVTEK  DFGMAKNPII60
WADFPDPDVI  RIDGEYYMVS  TTMHMMPGTP  VLRSTDLVNW  EIISYTYERL  EENDAHNLRN120
GLNIYGKGAW  APCIRYHNGK  FYVLFAALDT  GKTYLFSADN  PKGPWERTEF  REYFHDPSLL180
FDDDGKAYII  YGRTNIMIKE  LTSDYKAVSP  SGLNKVIIAS  GQEGMEGSHA  YKINGKYYIT240
TIWWENGNIR  RQYVYRADQI  DGPYEGRLVL  SGTMGYKEHG  VAQGGLVDTP  DGKWYAMLFQ300
DHDAVGRVPV  LVPVRWEDGW  PVYGDEEGKV  PIQFNKPGDS  SFVSQLIVSD  EFYQEDAVDV360
NTGSLGAYDY  SDAKGSEFVA  NSGFNDLMNV  DDVSAEVNAL  NRAERDEALP  NGSVLGLTWQ420
WNHNPENTKW  SLTDRKGYLR  LWTCNEAENI  LQARNVLTQR  TQGPYCSGWI  LMDVTHMLDG480
DYAGLAAFQQ  EYGFIGVTRQ  DNDFYIVMVD  KGVEKARTKL  MQRQVYLKVD  FDFTVDEAAF540
FYSYNGRDWN  MFGGKLAMRY  TIPHFMGYRF  AIFNYATKQT  GGYVDVDFFR  FADRLTGTGT600
SADLKAYLTE  SEIELSGDPE  TVCEFGILIN  EVPGNESIYG  IHASLVIPEE  LAVIGVDVHE660
KNLNATKVEL  EPKDGRYDMM  IYNTGGQPIS  FINYGLDKEL  VSIKFRLSKK  IPESFSKEIL720
VKSVEFLRVN  NQKTSYDVDS  AILKVTFSAP  SNAVGKVPPN  GNPLISHKFG  ADPCVLVYKD780
RVYVYMTNDI  LEYDEKGEVK  DNTYGRINKI  SVISSDDLMN  WTDHGEIHVA  GPQGAAKWAS840
QSWAPAIAHK  VVNGKDKFFL  YFSNNASGIG  VLTGDSPVGP  WEDPLGRPLI  SRSTPGFKGV900
VWLFDPAVLT  DDDGKAYIYF  GGGVPDGRES  MPDTARVMQL  GDDMISVVGE  AVTIPVPFMF960
EASGINKYKG  VYYFTYCANF  YSGPRPEGSP  QAGVIAYMTS  SGPMGPWKYG  GTVLKNPGHF1020
FGVGGNNHHS  LFEFKGKWYI  VYHAQTLAKA  MGIPKGYRSP  HLNQVFFNDD  GTIQEVIANN1080
KGVPQVKYLD  PYTRVEAETF  AWNAGVSTKT  ISEGNPAQRA  LTDIDNGDWI  GLSKVDFGNK1140
GASTFTAMVS  NVSADSIIEI  HLDSVDGKLV  GTLAIPAGGG  KPEWKEYTTE  VSGVHGVHNL1200
YLVFKGKSEK  KLFDFDYWYF  SE1222

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_10(56-321)+CBM91(412-592)+GH43_16(762-1073)+CBM6(1094-1221)

MNTFSRRNLL  VAISVAVIAI  LVILSGILAN  KYRETSGNVK  EKEAVVTEKD  FGMAKNPIIW60
ADFPDPDVIR  IDGEYYMVST  TMHMMPGTPV  LRSTDLVNWE  IISYTYERLE  ENDAHNLRNG120
LNIYGKGAWA  PCIRYHNGKF  YVLFAALDTG  KTYLFSADNP  KGPWERTEFR  EYFHDPSLLF180
DDDGKAYIIY  GRTNIMIKEL  TSDYKAVSPS  GLNKVIIASG  QEGMEGSHAY  KINGKYYITT240
IWWENGNIRR  QYVYRADQID  GPYEGRLVLS  DTMGYKEHGV  AQGGLVDTPD  GKWYAMLFQD300
HDAVGRVPVL  VPVRWEDGWP  VYGDEEGKVP  IQFNKPGDSS  FVSQLIVSDE  FYQEDAVDVN360
TGSLGAYDYS  DAKGSEFVAN  SGFNDLMNVD  DVSAEVNALN  RAERDEALPN  GSVLGLTWQW420
NHNPENTKWS  LTDRKGYLRL  WTCNEAENIL  QARNVLTQRT  QGPYCSGWIL  MDVTHMLDGD480
YAGLAAFQQE  YGFIGVTRQD  NDFYIVMVDK  GVEKARTKLM  QRQVYLKVDF  DFTVDEAAFF540
YSYNGRDWNM  FGGKLAMRYT  IPHFMGYRFA  IFNYATKQTG  GYVDVDFFRF  ADRLTGTGTS600
ADLKAYLTES  EIELSGDPET  VCEFGILINE  VPGNESIYGI  HASLVIPEEL  AVIGVDVHEK660
NLNATKVELE  PKDGRYDMMI  YNTGGQPISF  INYGLDKELV  SIKFRLSKKI  PESFSKEILV720
KSVEFLRVNN  QKTSYDVDSA  ILKVTFSAPS  NAVGKVPPNG  NPLISHKFGA  DPCVLVYKDR780
VYVYMTNDIL  EYDEKGEVKD  NTYGRINKIS  VISSDDLMNW  TDHGEIHVAG  PQGAAKWASQ840
SWAPAIAHKV  VNGKDKFFLY  FSNNASGIGV  LTGDSPVGPW  EDPLGRPLIS  RSTPGVKGVV900
WLFDPAVLTD  DDGKAYIYFG  GGVPDGRESM  PDTARVMQLG  DDMISVVGEA  VTIPVPFMFE960
ASGINKYKGV  YYFTYCANFY  SGPRPEGSPQ  AGVIAYMTSS  GPMGPWKYGG  TVLKNPGHFF1020
GVGGNNHHSL  FEFKGKWYIV  YHAQTLAKAM  GIPKGYRSPH  LNQVFFNDDG  TIQEVIANNK1080
GVPQVKYLDP  YTRVEAETFA  WNAGVSTKTI  SEGNPAQRAL  TDIDNGDWIG  LSKVDFGNKG1140
ASTFTAMVSN  VSADSIIEIH  LDSVDGKLVG  TLAIPAGGGK  PEWKEYTTEV  SGVHGVHNLY1200
LVFKGKSEKK  LFDFDYWYFS  E1221

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help