CAZyme3D

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Entry ID

Information for CAZyme ID: UZP74281.1

Basic Information

GenBank IDUZP74281.1
FamilyGH81
Sequence Length1304
UniProt IDUZP74281.1(MOD)Download
Average pLDDT?0.00
CAZy50 ID6091
CAZy50 RepYes, UZP74281.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2518994
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyHalieaceae
GenusCandidatus Paraluminiphilus
SpeciesCandidatus Paraluminiphilus aquimaris
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/UZP74281.1.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTRLFGLKQT  LLLSFVLTAG  LVTVLSSDRA  RASEPLSPTL  LSAIMVIMGG  DVDSDGDGVS60
DLDDAFPDDA  SESADADGDG  VGNNADAFPS  DASETLDTDG  DLVGNNADSD  DDGDGIDDDY120
DPQPLVVTDV  APLLADFSEA  FGGAVVGDDG  SFSFPSGAES  WAGFANENTS  IYPIVFEYGG180
RIQFTASVPS  GGSADVRFRF  ERLPHPDVDP  AYNTEAVTVS  GDAPTRYTID  VPAQGSKTFR240
SLILYLNDRD  VAVVITDILV  RPAKAPVETD  TDGDGVADSD  DAFPNDASES  LDTDGDGIGN300
NEDTDDDNDG  VLDGDDYAPL  DPDVTEQPAD  EVLSVYVDGV  VGGEWDRGIN  AFDQALNWGD360
CSVSSDCPSI  SWETVTDAER  GDVLQISHAN  NANLAGLFFG  STTGVDVLGF  INGAIEFDIK420
VVSGDANITM  KLDCTYPCTS  GDKLLGEKGV  GGWESVSVAM  AGLNSSGLDL  SKVNTGLVIW480
ATKFQDTVFQ  IDNVRFTGFD  ADADSTPAPV  TVPFKLTEMG  LGSYSDTINP  ASYQCVEDYG540
AWLYNAGVVP  FTNLGTCTNV  ANANPVKRLP  QLGGDAAQMH  TMTHRWWGSL  SFIGEMRTGD600
ANGAGYITPD  PFIARISERG  LRFMSIPTGL  SGGQGGFGYN  IPDPFSEVFD  GAAIGNSAHS660
NMDAKLLDYS  EGAVTAGWYD  GSTLVMEATF  VYGSPYIFFE  VYSGSPQIKT  WPNATSGQRG720
IWHEGGNSLG  VWTAIAGGRN  NFLVVGDAGT  SFSNTETAVV  TIDSPNNSFT  LAWSPDDSTA780
TRQSLEAYAR  NVVRDVVIDY  AVDRADNSVT  VSHRYMDTSG  EAVQTMAGLM  PLHWKRASGL840
TYAISTRSAR  GVIKFAPASG  FDYELPTVGV  LPSLPVIDGS  LDNDTLRSLV  SEFVALGSGA900
WNARVDTYWN  GKEVGRVAEV  LALADQLEMT  SEATALRDWL  KEELADWMSA  ERNGTLDDGN960
YFVYDDDWNT  LLGMEESFYA  HTLLQDHHFH  YGYFIRAAAE  VCRVDKAFCS  AEQYGSMFEM1020
LIRDYAAGRD  DALFPYLRNF  DPANGFSWAS  GEVNFARGNN  NESTSEAANA  YGAMVLYGLV1080
TGNDDIAERG  MYLHASTSAS  YWEYWNDIDG  WRGGDPEKRN  FPPDYPRITT  SIIWGEGSAF1140
STWFSPAFAH  ILGIQGLPSN  PLIMHVGLYA  DYLDDYVALG  LEESSNDKPS  GLPAGQWTDL1200
WWNLWAMTDA  DSAIADYEAT  ASYEPEYGEA  PAHTYHWLYT  MRALGELQTG  TGELTADYPA1260
SMAFKTGGTT  HYVVYNYGDS  ARTVTFSDGT  TVTAAANAFT  LEQR1304

Predicted 3D structure by AlphaFold2 with pLDDT = 0.00 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTRLFGLKQT  LLLSFVLTAG  LVTVLSSDRA  RASEPLSPTL  LSAIMVIMGG  DVDSDGDGVS60
DLDDAFPDDA  SESADADGDG  VGNNADAFPS  DASETLDTDG  DLVGNNADSD  DDGDGIDDDY120
DPQPLVVTDV  APLLADFSEA  FGGAVVGDDG  SFSFPSGAES  WAGFANENTS  IYPIVFEYGG180
RIQFTASVPS  GGSADVRFRF  ERLPHPDVDP  AYNTEAVTVS  GDAPTRYTID  VPAQGSKTFR240
SLILYLNDRD  VAVVITDILV  RPAKAPVETD  TDGDGVADSD  DAFPNDASES  LDTDGDGIGN300
NEDTDDDNDG  VLDGDDYAPL  DPDVTEQPAD  EVLSVYVDGV  VGGEWDRGIN  AFDQALNWGD360
CSVSSDCPSI  SWETVTDAER  GDVLQISHAN  NANLAGLFFG  STTGVDVLGF  INGAIEFDIK420
VVSGDANITM  KLDCTYPCTS  GDKLLGEKGV  GGWESVSVAM  AGLNSSGLDL  SKVNTGLVIW480
ATKFQDTVFQ  IDNVRFTGFD  ADADSTPAPV  TVPFKLTEMG  LGSYSDTINP  ASYQCVEDYG540
AWLYNAGVVP  FTNLGTCTNV  ANANPVKRLP  QLGGDAAQMH  TMTHRWWGSL  SFIGEMRTGD600
ANGAGYITPD  PFIARISERG  LRFMSIPTGL  SGGQGGFGYN  IPDPFSEVFD  GAAIGNSAHS660
NMDAKLLDYS  EGAVTAGWYD  GSTLVMEATF  VYGSPYIFFE  VYSGSPQIKT  WPNATSGQRG720
IWHEGGNSLG  VWTAIAGGRN  NFLVVGDAGT  SFSNTETAVV  TIDSPNNSFT  LAWSPDDSTA780
TRQSLEAYAR  NVVRDVVIDY  AVDRADNSVT  VSHRYMDTSG  EAVQTMAGLM  PLHWKRASGL840
TYAISTRSAR  GVIKFAPASG  FDYELPTVGV  LPSLPVIDGS  LDNDTLRSLV  SEFVALGSGA900
WNARVDTYWN  GKEVGRVAEV  LALADQLEMT  SEATALRDWL  KEELADWMSA  ERNGTLDDGN960
YFVYDDDWNT  LLGMEESFYA  HTLLQDHHFH  YGYFIRAAAE  VCRVDKAFCS  AEQYGSMFEM1020
LIRDYAAGRD  DALFPYLRNF  DPANGFSWAS  GEVNFARGNN  NESTSEAANA  YGAMVLYGLV1080
TGNDDIAERG  MYLHASTSAS  YWEYWNDIDG  WRGGDPEKRN  FPPDYPRITT  SIIWGEGSAF1140
STWFSPAFAH  ILGIQGLPSN  PLIMHVGLYA  DYLDDYVALG  LEESSNDKPS  GLPAGQWTDL1200
WWNLWAMTDA  DSAIADYEAT  ASYEPEYGEA  PAHTYHWLYT  MRALGELQTG  TGELTADYPA1260
SMAFKTGGTT  HYVVYNYGDS  ARTVTFSDGT  TVTAAANAFT  LEQR1304

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH81(609-1220)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help