CAZyme3D

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Entry ID

Information for CAZyme ID: UZO81929.1

Basic Information

GenBank IDUZO81929.1
FamilyGH5_1
Sequence Length500
UniProt IDUZO81929.1(MOD)Download
Average pLDDT?88.60
CAZy50 ID68974
CAZy50 RepYes, UZO81929.1
Structure ClusterSC_GH5_clus238
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2949996
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusAquimarina
SpeciesAquimarina sp. ERC-38

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKLLFLKVL  FCLFLLSEIT  AQNTCSGNWL  SVQGNKLLDS  NDNEVILSGV  NWFGFETSQN60
LLHGLWARDL  KSVLYQSKEL  GFNCFRIPWH  NLMLRDGVET  YKPNLWVQDL  LTNNGETGPY120
SNLYLEGKRK  PIEVLDEIIK  WCQENDMKVI  LDCHSRNPDG  YLAEGLWYTN  TVSEDEWIAD180
WVFMADRYKD  YDAVIGMDIN  NEPHGKIDDP  EGARWGNGDP  ATDWRLAAEK  CGNAILKANP240
NVLIIVEGIE  AYNKPDGTET  SYWWGGNLQG  ARDYPIRISD  MSKLMYSPHE  YGPTVYAQKW300
FDVPEFPDNM  PDIWEEQFNF  LNTNGTSPLF  VGELGIKTRQ  GKDEVWFAKF  IDFIKTQKLH360
FAFWSLNPNS  GDTGGILADG  WFDVVDWKME  YLKPLLFDLI  PNCSASSTLT  VNEIGIDAGS420
EFAIYPNPVE  DILSINNNPK  DAIKRIIIRD  VNGKVIYTIN  TKGSQSNTYK  QKVTDLTPGM480
YIANIITANG  EYQIKKFIKK  500

Predicted 3D structure by AlphaFold2 with pLDDT = 88.60 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKLLFLKVL  FCLFLLSEIT  AQNTCSGNWL  SVQGNKLLDS  NDNEVILSGV  NWFGFETSQN60
LLHGLWARDL  KSVLYQSKEL  GFNCFRIPWH  NLMLRDGVET  YKPNLWVQDL  LTNNGETGPY120
SNLYLEGKRK  PIEVLDEIIK  WCQENDMKVI  LDCHSRNPDG  YLAEGLWYTN  TVSEDEWIAD180
WVFMADRYKD  YDAVIGMDIN  NEPHGKIDDP  EGARWGNGDP  ATDWRLAAEK  CGNAILKANP240
NVLIIVEGIE  AYNKPDGTET  SYWWGGNLQG  ARDYPIRISD  MSKLMYSPHE  YGPTVYAQKW300
FDVPEFPDNM  PDIWEEQFNF  LNTNGTSPLF  VGELGIKTRQ  GKDEVWFAKF  IDFIKTQKLH360
FAFWSLNPNS  GDTGGILADG  WFDVVDWKME  YLKPLLFDLI  PNCSASSTLT  VNEIGIDAGS420
EFAIYPNPVE  DILSINNNPK  DAIKRIIIRD  VNGKVIYTIN  TKGSQSNTYK  QKVTDLTPGM480
YIANIITANG  EYQIKKFIKK  500

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_1(39-375)

MKKLLFLKVL  FCLFLLSEIT  AQNTCSGNWL  SVQGNKLLDS  NDNEVILSGV  NWFGFETSQN60
LLHGLWARDL  KSVLYQSKEL  GFNCFRIPWH  NLMLRDGVET  YKPNLWVQDL  LTNNGETGPY120
SNLYLEGKRK  PIEVLDEIIK  WCQENDMKVI  LDCHSRNPDG  YLAEGLWYTN  TVSEDEWIAD180
WVFMADRYKD  YDAVIGMDIN  NEPHGKIDDP  EGARWGNGDP  ATDWRLAAEK  CGNAILKANP240
NVLIIVEGIE  AYNKPDGTET  SYWWGGNLQG  ARDYPIRISD  MSKLMYSPHE  YGPTVYAQKW300
FDVPEFPDNM  PDIWEEQFNF  LNTNGTSPLF  VGELGIKTRQ  GKDEVWFAKF  IDFIKTQKLH360
FAFWSLNPNS  GDTGGILADG  WFDVVDWKME  YLKPLLFDLI  PNCSASSTLT  VNEIGIDAGS420
EFAIYPNPVE  DILSINNNPK  DAIKRIIIRD  VNGKVIYTIN  TKGSQSNTYK  QKVTDLTPGM480
YIANIITANG  EYQIKKFIKK  500

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help