CAZyme3D

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Entry ID

Information for CAZyme ID: UYZ23060.1

Basic Information

GenBank IDUYZ23060.1
FamilyGT51
Sequence Length803
UniProt IDUYZ23060.1(MOD)Download
Average pLDDT?82.96
CAZy50 ID27076
CAZy50 RepYes, UYZ23060.1
Structure ClusterSC_GT51_clus72
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID129985
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusMesobacillus
SpeciesMesobacillus jeotgali

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSKNSIVTRF  LRGWKRLHMN  QVLVLSVSTA  VLAFLSFFHV  YSEGADISAL  NDDMAQSTVI60
YDANGEVASK  ISALKNEGIK  IEDVPDHVKD  AVIAIEDHRF  YEHDGVDLVG  ISRAFVQNVK120
AGSIVEGGST  ITQQLTKNAL  LSSEKTYKRK  LEEFFMAREI  EKQYSKDDIM  QMYLNRIYFG180
NGSWGIKRAA  MGYFGKDVKD  LSISEAAMLA  GLIKAPSALD  PNKNFEEAIE  RRNLVLQMMK240
THGFIKEKEY  KQAVAEKIVL  NEKGGDPLRG  KYPYYVDHVI  DEAIKRYGLT  QEEILTGGLQ300
IYTELDATMQ  SAVEATYAKD  NLFPKGTDKQ  IVQSGAVLVD  PKTGGIRALV  GGRGEHVFRG360
YNRATQLKAQ  PGSTMKPIAA  FAPALEEGWG  VTDMLTDEEM  EFKDYKPQNY  NNKYKGEVPM420
YEALKDSLNV  PAVWLLDEIG  IAKGMESVKN  FGINLDPKND  RNLGLALGGL  STGVSPVTMA480
EAYSAFANNG  ERHETHAITK  IIDKEGKTIV  EYKGKKSKAV  SKETAEKMTT  MLLGVVQEGT540
GKGAQIPGRE  LAGKTGSTQV  PIEGVKGTKD  QWFVGYTPQL  VGAVWVGYDK  TDKEHFLTTT600
SSEGAALIFK  DFMTEALENT  KAQSFNVPPL  SKYIEEHKRQ  QRAKSVKELE  TRIKKESEKL660
KRQWEEAKKK  LKEKKESTEE  AKKKKKKETD  TESAAASTNS  DTGDTGEKND  TGDSKDTGGE720
GGSGGEGDSG  GEGDSGGEGD  SGGEGDSGGE  GDSGGEGDSG  GEEDTGGEGD  AGGEGDTGDE780
GDTGDTGDSG  DESSDDKEKE  NNN803

Predicted 3D structure by AlphaFold2 with pLDDT = 82.96 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSKNSIVTRF  LRGWKRLHMN  QVLVLSVSTA  VLAFLSFFHV  YSEGADISAL  NDDMAQSTVI60
YDANGEVASK  ISALKNEGIK  IEDVPDHVKD  AVIAIEDHRF  YEHDGVDLVG  ISRAFVQNVK120
AGSIVEGGST  ITQQLTKNAL  LSSEKTYKRK  LEEFFMAREI  EKQYSKDDIM  QMYLNRIYFG180
NGSWGIKRAA  MGYFGKDVKD  LSISEAAMLA  GLIKAPSALD  PNKNFEEAIE  RRNLVLQMMK240
THGFIKEKEY  KQAVAEKIVL  NEKGGDPLRG  KYPYYVDHVI  DEAIKRYGLT  QEEILTGGLQ300
IYTELDATMQ  SAVEATYAKD  NLFPKGTDKQ  IVQSGAVLVD  PKTGGIRALV  GGRGEHVFRG360
YNRATQLKAQ  PGSTMKPIAA  FAPALEEGWG  VTDMLTDEEM  EFKDYKPQNY  NNKYKGEVPM420
YEALKDSLNV  PAVWLLDEIG  IAKGMESVKN  FGINLDPKND  RNLGLALGGL  STGVSPVTMA480
EAYSAFANNG  ERHETHAITK  IIDKEGKTIV  EYKGKKSKAV  SKETAEKMTT  MLLGVVQEGT540
GKGAQIPGRE  LAGKTGSTQV  PIEGVKGTKD  QWFVGYTPQL  VGAVWVGYDK  TDKEHFLTTT600
SSEGAALIFK  DFMTEALENT  KAQSFNVPPL  SKYIEEHKRQ  QRAKSVKELE  TRIKKESEKL660
KRQWEEAKKK  LKEKKESTEE  AKKKKKKETD  TESAAASTNS  DTGDTGEKND  TGDSKDTGGE720
GGSGGEGDSG  GEGDSGGEGD  SGGEGDSGGE  GDSGGEGDSG  GEEDTGGEGD  AGGEGDTGDE780
GDTGDTGDSG  DESSDDKEKE  NNN803

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(65-240)

MSKNSIVTRF  LRGWKRLHMN  QVLVLSVSTA  VLAFLSFFHV  YSEGADISAL  NDDMAQSTVI60
YDANGEVASK  ISALKNEGIK  IEDVPDHVKD  AVIAIEDHRF  YEHDGVDLVG  ISRAFVQNVK120
AGSIVEGGST  ITQQLTKNAL  LSSEKTYKRK  LEEFFMAREI  EKQYSKDDIM  QMYLNRIYFG180
NGSWGIKRAA  MGYFGKDVKD  LSISEAAMLA  GLIKAPSALD  PNKNFEEAIE  RRNLVLQMMK240
THGFIKEKEY  KQAVAEKIVL  NEKGGDPLRG  KYPYYVDHVI  DEAIKRYGLT  QEEILTGGLQ300
IYTELDATMQ  SAVEATYAKD  NLFPKGTDKQ  IVQSGAVLVD  PKTGGIRALV  GGRGEHVFRG360
YNRATQLKAQ  PGSTMKPIAA  FAPALEEGWG  VTDMLTDEEM  EFKDYKPQNY  NNKYKGEVPM420
YEALKDSLNV  PAVWLLDEIG  IAKGMESVKN  FGINLDPKND  RNLGLALGGL  STGVSPVTMA480
EAYSAFANNG  ERHETHAITK  IIDKEGKTIV  EYKGKKSKAV  SKETAEKMTT  MLLGVVQEGT540
GKGAQIPGRE  LAGKTGSTQV  PIEGVKGTKD  QWFVGYTPQL  VGAVWVGYDK  TDKEHFLTTT600
SSEGAALIFK  DFMTEALENT  KAQSFNVPPL  SKYIEEHKRQ  QRAKSVKELE  TRIKKESEKL660
KRQWEEAKKK  LKEKKESTEE  AKKKKKKETD  TESAAASTNS  DTGDTGEKND  TGDSKDTGGE720
GGSGGEGDSG  GEGDSGGEGD  SGGEGDSGGE  GDSGGEGDSG  GEEDTGGEGD  AGGEGDTGDE780
GDTGDTGDSG  DESSDDKEKE  NNN803

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help