CAZyme3D

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Entry ID

Information for CAZyme ID: UXW85486.1

Basic Information

GenBank IDUXW85486.1
FamilyCBM91, GH43_12
Sequence Length522
UniProt IDA0A0F0KNC1(99.2,100)Download
Average pLDDT?95.21
CAZy50 ID64469
CAZy50 RepYes, UXW85486.1
Structure ClusterSC_CBM91_clus2, SC_GH43_clus6
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID582680
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium azadirachtae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIAAANPILP  GCHPDPSICR  VGEWYYLVTS  TFEYLPGLPV  LRSRDLIRWE  TVAHVIDRPG60
MLDFDGIGSS  GGLYAPTIRH  GLGLFWVVCT  LVDRDDASRG  GNFLVTASDP  AGPWSDPVML120
DAAGIDPSIA  FDDEGRVWLH  GTRLATAPEW  HDQTEVWVRE  YAPAERRLVG  AEHVIWRGAV180
RGAVWAEGPH  LYRVDGRWLL  IAAEGGTEFH  HAVSAARADD  IAGPYAGDRA  NPVFTHRQLG240
RTSPVIGAGH  ADLVQAADGS  WFAVMLAMRA  DDGRHYPLGR  ETFLCPVVWE  DGWPVFAPGE300
GRLPSAVAIP  WATDAPRAGS  WQPDDRVAGV  VAPADPRWTA  LRALPAEVAI  AEGDVWRLPV360
RAASLHDPSA  PAFLGVRQQH  ADVDVRCTLD  VRRLAEGESA  GVVLRQSERD  HVAVAVTRTP420
DGLRLTSERC  LGGEVLRRDH  GAPAEAPEVE  LVVSGRGYDY  AFRHAGRDLE  SADGRDLDAS480
ATGGFLGLWI  GAYATSAGAE  PSGEVRITRF  AYAPAQADHG  DR522

Predicted 3D structure by AlphaFold2 with pLDDT = 95.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIAAANPILP  GCHPDPSICR  VGEWYYLVTS  TFEYLPGLPV  LRSRDLIRWE  TVAHVIDRPG60
MLDFDGIGSS  GGLYAPTIRH  GLGLFWVVCT  LVDRDDASRG  GNFLVTASDP  AGPWSDPVML120
DAAGIDPSIA  FDDEGRVWLH  GTRLATAPEW  HDQTEVWVRE  YAPAERRLVG  AEHVIWRGAV180
RGAVWAEGPH  LYRVDGRWLL  IAAEGGTEFH  HAVSAARADD  IAGPYAGDRA  NPVFTHRQLG240
RTSPVIGAGH  ADLVQAADGS  WFAVMLAMRA  DDGRHYPLGR  ETFLCPVVWE  DGWPVFAPGE300
GRLPSAVAIP  WATDAPRAGS  WQPDDRVAGV  VAPADPRWTA  LRALPAEVAI  AEGDVWRLPV360
RAASLHDPSA  PAFLGVRQQH  ADVDVRCTLD  VRRLAEGESA  GVVLRQSERD  HVAVAVTRTP420
DGLRLTSERC  LGGEVLRRDH  GAPAEAPEVE  LVVSGRGYDY  AFRHAGRDLE  SADGRDLDAS480
ATGGFLGLWI  GAYATSAGAE  PSGEVRITRF  AYAPAQADHG  DR522

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_12(6-294)+CBM91(335-515)

MIAAANPILP  GCHPDPSICR  VGEWYYLVTS  TFEYLPGLPV  LRSRDLIRWE  TVAHVIDRPG60
MLDFDGIGSS  GGLYAPTIRH  GLGLFWVVCT  LVDRDDGSRG  GNFLVTASDP  AGPWSDPVML120
DAAGIDPSIA  FDDEGRVWLH  GTRLATAPEW  HDQTEVWVRE  YAPAERRLVG  AEHVIWRGAV180
RGAVWAEGPH  LYRVDGRWLL  IAAEGGTEFH  HAVSAARADE  IAGPYAGDRA  NPVFTHRQLG240
RTSPVIGAGH  ADLVQAADGS  WFAVMLAMRA  DDGRHYPLGR  ETFLCPVVWE  DGWPVFAPGE300
GRLPSAVAIP  WATEAPRAGS  WQPDDRVAGV  VAPADPRWTA  LRALPAEVAI  AEGDVWRLPV360
RAASLHDPSA  PAFLGVRQQH  ADVDVRCTLD  VRGLAEGESA  GVVLRQSERD  HVAVAVTRTP420
DGLRLTSERC  LGGEVLRRDH  GAPAEAPEVE  LVVSGRGYDY  AFRHAGRDLE  SADGRDLDAS480
ATGGFLGLWI  GAYATSAGAE  PSGEVRITRF  AYAPAQADHG  DR522

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help