CAZyme3D

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Entry ID

Information for CAZyme ID: UXI22599.1

Basic Information

GenBank IDUXI22599.1
FamilyAA3_2
Sequence Length874
UniProt IDA0A834VE57(99.1,89.1)Download
Average pLDDT?71.32
CAZy50 ID21153
CAZy50 RepYes, UXI22599.1
Structure ClusterSC_AA3_clus129
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID52283
KingdomEukaryota
PhylumArthropoda
ClassArachnida
OrderSarcoptiformes
FamilySarcoptidae
GenusSarcoptes
SpeciesSarcoptes scabiei
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/A0A834VE57.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTKLGFANIT  SLLFSFLSIS  NIIFNKQSSY  DQLTNRNNWN  AYYDYIIVGA  GTSGSVLASR60
LSEDPEVTVL  LLEAGTSETV  ASNTPGLSET  LIGTIMDWKI  LSVPQNNSCL  AMNNRRCHLA120
SGRVIGGTSS  INRMYYLRGN  PKDFDEWESK  YGLKSWSWKD  IFPLMMRNEN  QEDPERAKTG180
HYGLKGPLTL  GQIESIDDRN  SSDHKLMASF  LLASKHFGYR  IQDPNTGAYN  TSSLLQSTIK240
QGKRQSSSTV  FLEPFVKNRP  NLHILTNSLV  VKILFENDQQ  AIGVQFYRDW  KQYSVFARQE300
ILIAAGALNS  PKLLMLSGIG  PQRELNRLKI  PIVSDLMVGE  NLHDHVGSLG  LYFIANDLPQ360
AGITKQQLKQ  YFYRGKGPLS  ESPFAATMIK  SNRNLMNNFQ  TSSSSSSPSS  SGTDSMLLMH420
VNGLTSRELS  AELTEQQINL  KRSIWKDYFG  EKIRATIGKQ  QFTILPIVLK  PKSRGSVRLK480
SNNPFDMALV  DPNYFGDPND  LEQIVSTMRE  ALKIVRSDPF  TRFRTEWYRH  PVPGCEYEFK540
RFESEIDSQT  MNEYVSEFDN  FITSADNFYE  KSVSPTELPE  KQLENESSIK  VLKHKNFVRD600
PSTINQVHSS  PSSSFHFVSS  LVSRLLKKSL  FKKNFEEFSR  RQSRSQKMNR  INFEHYWLGQ660
TNQSLSNQLE  SLSHPLINKT  LYGGLIDGFS  SNDPNDQSVI  TVWSSHGTNQ  KSRPKPSESE720
KLSEKPRTNS  ITSTTTESIY  DLLTDVSPIV  LTGYIQSPPY  DFQSPSSIQS  SELRNKSRIS780
SQNGMDQYLR  CMARMLTMPI  GDYVGTCKMG  PPQDVDRVVD  ERFRVIGTKS  LRVIDNSVVP840
EITTGSLAPV  ALMLGERGAE  FIKEDRRKRV  RRSN874

Predicted 3D structure by AlphaFold2 with pLDDT = 71.32 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTKLGFANIT  SLLFSFLSIS  NIIFNKQSSY  DQLTNRNNWN  AYYDYIIVGA  GTSGSVLASR60
LSEDPEVTVL  LLEAGTSETV  ASNTPGLSET  LIGTIMDWKI  LSVPQNNSCL  AMNNRRCHLA120
SGRVIGGTSS  INRMYYLRGN  PKDFDEWESK  YGLKSWSWKD  IFPLMMRNEN  QEDPERAKTG180
HYGLKGPLTL  GQIESIDDRN  SSDHKLMASF  LLASKHFGYR  IQDPNTGAYN  TSSLLQSTIK240
QGKRQSSSTV  FLEPFVKNRP  NLHILTNSLV  VKILFENDQQ  AIGVQFYRDW  KQYSVFARQE300
ILIAAGALNS  PKLLMLSGIG  PQRELNRLKI  PIVSDLMVGE  NLHDHVGSLG  LYFIANDLPQ360
AGITKQQLKQ  YFYRGKGPLS  ESPFAATMIK  SNRNLMNNFQ  TSSSSSSPSS  SGTDSMLLMH420
VNGLTSRELS  AELTEQQINL  KRSIWKDYFG  EKIRATIGKQ  QFTILPIVLK  PKSRGSVRLK480
SNNPFDMALV  DPNYFGDPND  LEQIVSTMRE  ALKIVRSDPF  TRFRTEWYRH  PVPGCEYEFK540
RFESEIDSQT  MNEYVSEFDN  FITSADNFYE  KSVSPTELPE  KQLENESSIK  VLKHKNFVRD600
PSTINQVHSS  PSSSFHFVSS  LVSRLLKKSL  FKKNFEEFSR  RQSRSQKMNR  INFEHYWLGQ660
TNQSLSNQLE  SLSHPLINKT  LYGGLIDGFS  SNDPNDQSVI  TVWSSHGTNQ  KSRPKPSESE720
KLSEKPRTNS  ITSTTTESIY  DLLTDVSPIV  LTGYIQSPPY  DFQSPSSIQS  SELRNKSRIS780
SQNGMDQYLR  CMARMLTMPI  GDYVGTCKMG  PPQDVDRVVD  ERFRVIGTKS  LRVIDNSVVP840
EITTGSLAPV  ALMLGERGAE  FIKEDRRKRV  RRSN874

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(43-540)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help